Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06318 ATGTCTGTGCCAGTAGAACAAGGCTATGGTGGTGGTGAGGTTCCTTTAATGGAAACCACTGAGAGGAACATTGGATTGAACCTCAAAGCTACTGAACTGAGGCTTGGGTTGCCTGGCTCTGAGTCACCGGAGAGAGAAAATGGTGGGTTGTCCATGCTCAAGTGTTTGGTGTCTGGAGCTAAAAGGGGTTTCTCTGATGCTATAGATGGAGGTTCTGGGAAATGGGGTGTGTCTGGAAATGGTGGATCTGATGTGGGGTTGTGTAAAGATGGAAACTTGTTTTCTCCTAAAGGTAAAGTTTCTGGTGTTGGTGTTGGTGTTGGTGGTGAATGTAACAAGCAACAGAATCTTTTTTCTGCTACAGTTGTTAAAGAAACTGTTCCTCATTCTCCAAAGACCTTGCATGAGAATAAACCACAGATTTCTCCTCCTTCTGCTAAGGCACAGGTTGTAGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCTATGGTTTCTCCGCCTCAAAAGAATGATGGTGATGCAGAAGCTAAGTCTGAATGTCTTTATGTAAAAGTTAGCATGGAAGGTGCTCCGTACTTGAGGAAAGTGGATCTGAATGGTTTTAGCTCTTACAGGGAACTTTCTTCAGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGTCAATGTGGCTCGTACGGGGTTTCTTGTCAAGAAAAAACTTTAAGTGAGAGTAGATTGGTGGATCTTCTACATGGTTCAGAATATGTGCTTACTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGTGATGTTCCATGGGAGATGTTCACCGAGTCTTGCAAGAGGCTAAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCTCGAGCTATGGAAAAGTGCAAAAGTCGCAACTAG 909 0.4378 MSVPVEQGYGGGEVPLMETTERNIGLNLKATELRLGLPGSESPERENGGLSMLKCLVSGAKRGFSDAIDGGSGKWGVSGNGGSDVGLCKDGNLFSPKGKVSGVGVGVGGECNKQQNLFSATVVKETVPHSPKTLHENKPQISPPSAKAQVVGWPPIRSFRKNSMVSPPQKNDGDAEAKSECLYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCQEKTLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06318 302 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 289 IPR003311 GO:0005634|GO:0006355
Vivi5g06318 302 FunFam Auxin-responsive protein 176 294 - -
Vivi5g06318 302 Gene3D - 175 296 - -
Vivi5g06318 302 ProSiteProfiles PB1 domain profile. 181 284 IPR000270 GO:0005515
Vivi5g06318 302 Pfam AUX/IAA family 31 293 IPR033389 -
Vivi5g06318 302 SUPERFAMILY CAD & PB1 domains 179 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06318 Vivi-Chr5 169618162 169620445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06318 184 292 B3 DNA Binding Superfamily AT4G23980 30.275 6.24e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi5g06318 AUX_IAA 5.5e-84 CL0072