Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06310 ATGGAGCGAATCGTTGGCGGAAACTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTACCTCGCTACGCATATTGATACTTATGAAATTGTCGCTATCAAGATCGAGAATAGTAAAACAAAGCATCCACAACTACTTTACGAGGCAAAGGTCTACAATGTTCTTCAAGGAGGAAGTGGCATTCCAAGCATAAAATGGTTTGGTGTAGATCGGGAGGATAATGTACTGGCTATGGATTTACTTGGCCCTAGTCTTGAAGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACTGTGTTACTGTTAGCTGATCAAATGATTACTAGAATAGAATATGTGCACTCTAAAGGATATTTACATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAAGCCAATCAGGTTTACATGATCGATTTTGGGCTTGCAAAACGGTATCGGGACTCCACAAGCAATCGCCACATCCCTTACAGGGAGAACAAAAATTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCTCTAGGATACGTACTTCTCTACTTCCTTAGGGGAAGCCTTCCCTGGCAAGGTCTAAGGGCTGCAACAAAGAAACAGAAGTATGATAAGATATGCCAGAAGAAAGTATCAACTCCCATCGAGGTACTATGCAAATCTCATCCTGTAGAGTTTGCTTCATATTTCCATTACTGCCACTCTTTGACGTTTGATCAACGGCCTGATTATGGATTCTTGAAGCGTTTATTTAGAGACCTATTTGCTCGGGAAGGCTATGAGTTTGATTTCGTTTTTGATTGGAGCATTTTAAAGTATCAGCAATCACAGAAGCATAGAGTGCCACCTTCCTTATCTCCAGTTCCTGGGGCAAGTAACAATCGTGCCGTCCCAATGGAATTTGACAAACATCAAGGGCACGGTGAAGAGCGAATTAAATCAGGAAATGCTACTGGTCCTGGTGTTAAAGTACAGTTTAAATCACCAACTGGTAGAAACTTGAGTTCTGATAACCCTCTTGACAAGAATATTTTTGGAGAAGCAAATATGCCCTCTACTTCGCATTCTCCTGCTGGAGCTTCAAAAAGGAACCCCTTGAAGCCTGCCTTGTCTGCCGAACCTTCCAACCCTGGACATGGGCAAGGAAGTAAAATTGGCCCTTCAAGTAGCTGGATATCATCTTTGCAGCGCATATCTTCTTCCAAATGA 1275 0.4251 MERIVGGNYKLGRKIGSGSFGEIYLATHIDTYEIVAIKIENSKTKHPQLLYEAKVYNVLQGGSGIPSIKWFGVDREDNVLAMDLLGPSLEDLFVYCGRKFSLKTVLLLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYMIDFGLAKRYRDSTSNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLRAATKKQKYDKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDFVFDWSILKYQQSQKHRVPPSLSPVPGASNNRAVPMEFDKHQGHGEERIKSGNATGPGVKVQFKSPTGRNLSSDNPLDKNIFGEANMPSTSHSPAGASKRNPLKPALSAEPSNPGHGQGSKIGPSSSWISSLQRISSSK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06310 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06310 424 MobiDBLite consensus disorder prediction 350 382 - -
Vivi5g06310 424 Gene3D Transferase(Phosphotransferase) domain 1 1 329 - -
Vivi5g06310 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vivi5g06310 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06310 424 FunFam Casein kinase I isoform delta-like 1 340 - -
Vivi5g06310 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vivi5g06310 424 PANTHER CASEIN KINASE-RELATED 9 350 - -
Vivi5g06310 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vivi5g06310 424 MobiDBLite consensus disorder prediction 327 424 - -
Vivi5g06310 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06310 424 MobiDBLite consensus disorder prediction 398 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06310 Vivi-Chr5 169574195 169579272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06310 9 215 EF-hand Containing Proteins AT4G23650 30.516 5.59e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vivi5g06310 Pkinase 2.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06310 K08960 - gmx:100800342 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06310 5 169574195 169579272 Vivi5g06310 5 169574195 169579272 ECH
Vivi5g06310 5 169574195 169579272 Vivi4g00106 4 1614134 1618399 PCT