Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06296 ATGGGAGAGTTAGAGTTACCTCAACCTATCTCAGAGAAAATAGCCTCTACTATTACTACTACTTCTACGGAGGAGCCCGGTTTATCTGAACCGGTTCAAAACCGGTCCAAACGGCCCAGAGATAGTACCAACAGCAACCACCCGGTTTACAGAGGCGTCCGGATGCGTGCATGGGGAAAATGGGTATCCGAAATCCGCGAGCCGCGGAAAAAGAATCGGATCTGGCTCGGCACGTTCGCCACCGCGGAAATGGCGGCTCGTGCTCACGACGTGGCTGCTCTCGCTATCAAAGGAAACTCAGCCATCCTCAACTTCCCTGAACTCGCGGATTCAATGCCTCGACCTGAGTCGAAATCTCCTCGGGATGTCCAAGCCGCCGCCGTGAAAGCCGCTGCCATGGAAGTTCCTGATCAACAAACGAGATCTCAATCACATACATCCTCTTCTTCTTCATCTTCCTCATCCTCATCGCTGTCGCAATCTTCGTCGTCGTCTTCGTTGGCGGTTTCTTCTTCCGAAGAACCGTCAACACCAGACGAACTCGGTGAGATTGTGGAACTACCGGCATTGGGAACGAGTTTTGAATTACCCGACCCGGTTAATATGGTGTTTTCCGACCCGGTTGATGGATGGCCTTATTATTCACACAGTTGGGATCAGATTTCAATGCATCAAGACAACTCTGAAAGTATAAGTATGATTCTTTGTGATTTTGAGGGTTCATTGTGGCAGCATTAA 738 0.5 MGELELPQPISEKIASTITTTSTEEPGLSEPVQNRSKRPRDSTNSNHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELADSMPRPESKSPRDVQAAAVKAAAMEVPDQQTRSQSHTSSSSSSSSSSSLSQSSSSSSLAVSSSEEPSTPDELGEIVELPALGTSFELPDPVNMVFSDPVDGWPYYSHSWDQISMHQDNSESISMILCDFEGSLWQH 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06296 245 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Vivi5g06296 245 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Vivi5g06296 245 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vivi5g06296 245 MobiDBLite consensus disorder prediction 12 30 - -
Vivi5g06296 245 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Vivi5g06296 245 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vivi5g06296 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 193 - -
Vivi5g06296 245 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Vivi5g06296 245 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vivi5g06296 245 MobiDBLite consensus disorder prediction 136 177 - -
Vivi5g06296 245 MobiDBLite consensus disorder prediction 111 179 - -
Vivi5g06296 245 MobiDBLite consensus disorder prediction 1 48 - -
Vivi5g06296 245 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Vivi5g06296 245 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06296 Vivi-Chr5 169396947 169398419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06296 29 227 AP2-EREBP Transcription Factor Family AT5G11590 57.635 7.90e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g06296 AP2 7.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06296 5 169396947 169398419 Vivi5g06296 5 169396947 169398419 ECH