Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06287 ATGGCGCAGTTTCCCTGCGACTCTAATGGCGTTTGCATGGTATGCAAACAGAAGCCTCTAGAAACCGAAACTCTCCACTGCATAACATGCGTAACTCCATGGCATTTTACATGTTTACCCCTCGCTCCAACCACTATCGTCGATTGGGAATGTCCCGATTGCTCTCAACCGAACCTCGCCGCCGATTCGCTTGCTCCGTCCATCGCCGGCGATCTCGTTTCCTCAATTCGCGCCATCGAGAACGATCCGTCGCTCACCGATGAAGAGAAAGCGAAGAAACGCCAAGAACTCGTTGGTGGATCTTCTACTGAAAGTGAAACCATCAATAGAGGATGTAATGATTCTATTGATATCTTCGATGGAAGCCTCAATTGTTCCGTTTGCGTGCAGTTACTGGAGAGACCTGTCACTACTCCGTGCGGGCACAATTTTTGTTTGAAGTGTTTTGAGAAATGTATTAGGCAAGGAAAGAACACCTGTTCGAATTGTAGGACTCCAATTCCGGCGAAGATGGCAAGTAATCCACGAATTAATTCACAGTTAGCGATAGCGATTCGTAATGCGAAGCTAGCGAGATCGGAGGGTGGTGTTGGAGGGAGTGGCGGTTCGAAAGTTTATCACACTGTTCATAATGATGAGCTTCCTGATACTGCTTACACTACGGAGAGAGCAAAGAAAACAGGGAAGGCGAATGCTTGTAGTGGGAAGATATTTGTGACGATTGCTAAAGATCATTTTGGGCCGATTGTTGCTGAGAATGATCCAACGAGGAACCGTGGGGTTCTTGTTGGTGATTCGTGGGAGGATAGGATGGAATGTAGGCAATGGGGGGCTCATTTACCTCATGTTGCTGGGATTGCAGGTCAGAGTAATCATGGTGCTCAATCCGTGGCTCTTTCTGGTGGATATGTTGATGATGAGGATCATGGTGAGTGGTTTCTTTATACTGGAAGTGGTGGAAGAGATCTCAGTGGTAACAAACGTACCAATAAGGATCAGTCTTTTGATCAGAAGTTTGAGAGTTATAATGAGGCTTTGAGAGTCAGTTGTCGAAAAGGTTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCACCTGAAAAAGGGGTGAGATACGACGGCGTTTATAGAATTGAGAAATGCTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTATCTGGAGACCGTCCCCGTTCACTACCTATAATTGAGGAATTTAAGGGTGCAATTGATATTACTGAAAGAAAGGGTGATCCGTCATGGGACTTTGATGAGAAAAAGGGCTGCTGGTTGTGGAAGAAGGCCCCACCACTAAGTAAGAAAACAAGCAAAAGGGTGTCCTCCAAAAAAAGCAAGGATACGCTGTTAAAAGATTTTGGTTGCAATATATGTCACAAAGTGTTGTCTTCACCTCTTACTACTCCTTGTGCTCACAACTTCTGCAAAGCTTGCCTGGAGGATGCCTTTTCTGGCCAAAGCTATATCAGACAGAGGGCATCTCAAAGTGGACGCTCTTTGCGGACACGCAAGAACATTATGAAATGTCCTACTTGTTCAGCTGATATAGCTGATTATCTTCAGAATCCACAGGTTAACAGGGAGATGATGGGTGTCATTGAATCACTCCAGCGACAGACTGAGCAGCAGATGGAGGAGAGTTCTGAAGAATTAAGTGCTAAAAGTGATGAAAATCTCACGCCGGATGAGGAGATGGAGGAGGTTTCAAATCCCTGTGATTCAGGTGAAAAAGTCTTGATGGAGATTAACAATGATTTGGATCCTCCAAAGAAGGAGAGGAAAGTTGCCGGTGGCAAGGTTGTGGTGAACTTGGAGGAACATATTGATGATGCAGTAGTAGAAAGCGAATCAATGGATTTTGATTAA 1956 0.4509 MAQFPCDSNGVCMVCKQKPLETETLHCITCVTPWHFTCLPLAPTTIVDWECPDCSQPNLAADSLAPSIAGDLVSSIRAIENDPSLTDEEKAKKRQELVGGSSTESETINRGCNDSIDIFDGSLNCSVCVQLLERPVTTPCGHNFCLKCFEKCIRQGKNTCSNCRTPIPAKMASNPRINSQLAIAIRNAKLARSEGGVGGSGGSKVYHTVHNDELPDTAYTTERAKKTGKANACSGKIFVTIAKDHFGPIVAENDPTRNRGVLVGDSWEDRMECRQWGAHLPHVAGIAGQSNHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQKFESYNEALRVSCRKGYPVRVVRSHKEKRSSYAPEKGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRSLPIIEEFKGAIDITERKGDPSWDFDEKKGCWLWKKAPPLSKKTSKRVSSKKSKDTLLKDFGCNICHKVLSSPLTTPCAHNFCKACLEDAFSGQSYIRQRASQSGRSLRTRKNIMKCPTCSADIADYLQNPQVNREMMGVIESLQRQTEQQMEESSEELSAKSDENLTPDEEMEEVSNPCDSGEKVLMEINNDLDPPKKERKVAGGKVVVNLEEHIDDAVVESESMDFD 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06287 651 SMART ring_2 125 163 IPR001841 -
Vivi5g06287 651 SMART ring_2 12 54 IPR001841 -
Vivi5g06287 651 SMART ring_2 485 542 IPR001841 -
Vivi5g06287 651 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Vivi5g06287 651 MobiDBLite consensus disorder prediction 83 107 - -
Vivi5g06287 651 ProSitePatterns Zinc finger RING-type signature. 500 509 IPR017907 -
Vivi5g06287 651 SUPERFAMILY RING/U-box 118 171 - -
Vivi5g06287 651 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 582 IPR045134 -
Vivi5g06287 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 189 IPR013083 -
Vivi5g06287 651 SMART PHD_3 11 55 IPR001965 -
Vivi5g06287 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 593 IPR013083 -
Vivi5g06287 651 Pfam SAD/SRA domain 259 407 IPR003105 -
Vivi5g06287 651 ProSiteProfiles Zinc finger RING-type profile. 485 543 IPR001841 -
Vivi5g06287 651 MobiDBLite consensus disorder prediction 573 589 - -
Vivi5g06287 651 ProSiteProfiles Zinc finger RING-type profile. 125 164 IPR001841 -
Vivi5g06287 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
Vivi5g06287 651 SUPERFAMILY RING/U-box 478 569 - -
Vivi5g06287 651 MobiDBLite consensus disorder prediction 83 99 - -
Vivi5g06287 651 Pfam RING-type zinc-finger 485 526 IPR027370 -
Vivi5g06287 651 SMART G9a_1 251 408 IPR003105 -
Vivi5g06287 651 MobiDBLite consensus disorder prediction 568 605 - -
Vivi5g06287 651 Gene3D - 227 425 IPR036987 -
Vivi5g06287 651 Pfam Zinc finger, C3HC4 type (RING finger) 123 168 - -
Vivi5g06287 651 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 227 422 - -
Vivi5g06287 651 Coils Coil 567 587 - -
Vivi5g06287 651 CDD RING-HC_ORTHRUS_rpt1 122 168 IPR047498 -
Vivi5g06287 651 ProSiteProfiles YDG domain profile. 256 404 IPR003105 -
Vivi5g06287 651 SUPERFAMILY PUA domain-like 230 424 IPR015947 -
Vivi5g06287 651 SUPERFAMILY FYVE/PHD zinc finger 4 56 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06287 Vivi-Chr5 169216090 169220043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06287 3 572 C2H2 Transcription Factor Family AT5G39550 59.661 0.0 696