Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06256 ATGTCTCATCCAACAACTTCAAAGTATGATGTGTTCCTCAGCTTCAGAGGAGAGGACACTCGTGAAAACTTCACTAGTCATCTTTACAAAGAGTTGTATAGAAAAAATATTGAAACATTCATAGACTATAAGCTTGGCAGGGGAGAAGAGATTTCTCCAGCACTGCTGAAAGCAATAGAAGAATCAGATATTTATGTGGTCATTTTGTCGGAACATTATGCTTCTTCCACTTGGTGTTTGGAAGAACTCACAATGATACTTGAATGTAGGAAGAAATATGGTAGGGAAATTATACCTGTTTTCTATAAGGTGGATCCATCAGATGTTAGGCATCAGAGAAAGAGTTATGCAGACGATTTTGCTAAACATGAAAAACAACCTGCTGACAAAGTTGAGGCATGGCGGACTGCTCTAAGAAAAATTGCTGATCTTTCTGGCATGCATTCCAAAAACTTCAGCCATGAAAGTGAACTTGTTGAAGAGATTGCAAAAGATGTTTTGAACAAACTAAAAGATTGTTCCTTAAGTGATCATCAAAGAATGATTGGAATTGAAAAGCACATTCAACAAATTCAATCTTTGTTGCTCCTCGAGTCGCCATCTGTTCGTATCATAGGAATATGGGGCATGGGAGGGATAGGCAAATCAACAATTGTTAGTACAATTTACCGCAAACTTAGAACTGATTTCAGTTCTGGAAGCATTGTTCTAAATTTTAAAGAAGAAGTAGAAAGACTTGGAATAGACCAAGTAAAAAGAAAATGCTTATCACAACTTCTAGATGATAAAGACGCGACTTCTTCTCGATCCAGTTTTTCGTCTGAACGAAGGCTTGAACGAGCAAAGGTTCTCTTTATTCTCGATGATGTGAGTGATTGTGGTCAAATTCTAGGCTTAATTCGACACAGTAAATTCGGCCAAGGGAGTAGAATCATTGTGACTAGTAGAGACAAGCAAGTGCTTCACAATGTTGTTGATTATATATATCATGTAAAGGAGATGGATTTTCAAGACTCCCTACAACTTTTCTGTTTAAGTGCTTTTAAACAAAACCATCCAAAAGAAACTTATGAGGGCTTATCAGAAAAGGTATTACATTATGCTAAAGGGGTTCCATTAGTTCTCAAAATTTTTGGCTTATTGCTTCATGATAAAGTAAAGGAGATATGGGAAAGCGCGTTGAAAAAGCTCGAGAAGCAAACTGATGTTACAGCTTTCAATGTGTTGAAGTTAAGTTATGACGGACTTGACGATGAACAGAAGGATATATTTCTTGACATAGCTTGCTTTTATAGAGGACATTTGGTGAATGTTGTAGCGCAAACATTGGATTGTTGTGGTTTTTCTGCCCAATACGGAATGGATGTTCTCAAAGATAGATGCCTTATATCAAATTTAGAAGGTAGAATTGTGATGCATGATCTAGTACAGGAAATGGGACAAAAAATTGTTCGACAACAATGCGTTGATAATCCTGGAAAACGAAGTCGGTTATGGATGGCCGATGATATTTATACTATTTTGAGAAACAATAGGGGGACAGATGCAATTCAGTGTATATTCCTTGACTTATGCAAGATAAAGAAAGTTGAACCACATGCTGAAACTTTCAAAGAAATGCATAATCTTAGAATGATCCAATTCTATAATCCTTCTGCATTTCGGAAAGAATCAAATGTGATCATTCGTACGGTTCTGAAGAGTCTTCCGGATAATTTAAAATTTCTTCGTTGGGATGGTTTCCCTCAAAGATCTTTGCCGCTAGATTTTTGTCCAGAAAATCTTGTTACACTTGATATGCCTCATAGCCGTCTTGAAAAACTTTGGGACGGGGATCAGGATTTGCCGAATTTGAAAAGGCTTAACCTTAGTTTTTCTCAGAAGCTGATAGAAGTTCCAGACCTCTACTTGTCACCAAATATTGAAGAAATAATTCTGAGTCATTGTGCAAGTTTGGTACAAGTTCACTCCTCAGGCTTCCTCGACAACCTGAACTGTTTATGCATAAACGGTTGTATCGAACTCAGGAGTTTGAATCTTCCTAGCAATATTCTATCGAAATCATCAGGATTAGTTGTTCTCCATGGTTGTGTCAACCTTGAAACACTTGTAATCAGCAGTAGTAGAACTGAGGCAGTTCAATCAAACAGTTGTTCGCGTTTTTATGGACTTTGGGACTTTGAAGCGATAAATGTTTATGGACTTAGCGATGAACATGAACCAAAGAAAGACGCCGGGGGTTATGAGATTGGTGAATACTCTTCAAGAGCTTTTCGTCCCGTTGATAATGCAGACGTATACAAAAACGAAGAACCATTGGACAATATCTGCTTGCTAAACATGAAAGTGAAGATAGACACAATGCCCTCATTATTTTCAAGTATCAATCAACTTTGTTGGTTAGATATTTCTAAATGCGAGTCCTTAACATTCCTACCACCTGAAGTTTTCAATCTGAGTTTTCTAAGAAGACTTTATCTCGGCGGATGTTTAAATTTGGAAGAGTTACCTGAAATCAAGAAGAGCATGGAAAATCTAACCGTGCTCGTCTTAGACAAAACAGCAATAAGAGAACTACCTTCATCCTTGAACCATTTGATCCGGCTAGAAGAATTGAGCTTGAAAAGGTGTTCAAGGCTCATGACTATTCCGTCTTCCATTGGAAATCTCAGCAAACTCGTCAAATTAGACCTCACCGACTGTGAATCACTTAAAACTTTTCCAAGCAGCATTTTCAAACTGAAGTTGACGAAACTCGACTTGCACGGTTGCACAATGCTTAGGACCTTTCCAGAGATCTTAGAGCCAGCCGAAAGTTTCACTCTTATTAACTTAACAAAAACAGCAATTCAAAATTTGCCTTCGTCATTCGAGTATTTGGTTGGGTTGCAAACCTTGCGCCTGAATCTTTGTAGTAATCTGGTGTCACTTCCAAACAGCATTGTCAAACTAAATCGTCTATCCGTTCTTGATTGTTCCGGTTGTTGCAGATTAACAAAAATCCCAAATGACATTGGTTGCTTGTCATCATTGACGAAACTTTCGTTGCAAGAAAGCGGTATTATGAACCTTCCCGAAAGCATGTCTCATCTCTCGAATTTGGAATCACTTGACATAAGTGATTGCAAATGGCTTGAATGTATCCCAAATCTTCCGCCACGTCTAAACCAGTTCTCCGCGTTTGATTGCCAATCCATTAAGACACTGGAGCCAAATTCAAAGGTGAAACTCCTATCTACTTCCAAAGAAGGTACCTTCAAATTTCATTTCACCAATAGTCAAAAACTAGATGAAACTTTTTCGAAAAACATCGGTGAAGTAGCATGGCATAAGATCTCTGATGATGCATATAGGATAGTGTTCTTCAGTTTTTCAGGAAGCGCAGTTCCTAGCTGGTTACCTTACAGTTGCAAGGGAAACTCAGTAACAATGAAAAAAGATTCTCCTTATTTGTGGGGCTATAACAGGCTTGTTGGATTTGCTCTTTGTGTCGTTTTTCGACGCGCAAATATTGAAGACACCGAAACAAGAAGTACTAGCTTTGTATACAGACTAACATTTGAATCCAATGGCGAAACACGATATCTTCCATACCAAGGCCTAAAACTCGATATCTACTGGAAGGATCGAAGCCGGTATTTCATCGAAGATCAAACATTTCTATGGAAATATCAATTGGACTTAGCAAGCATTGGCAATGAGCTCTTTCATGCCTACAACTTCATTTTAGAGATTCAAGAAGATATTCGGCATCTCTCAAGTTCTACTTCGAACATCATTGTGAAAGAATGTGGAATCTGTCCTCTATATACCAAATATAGTGGTAGTAATGTTATGAGATTGTTATATAATGGCAATGAAGGACCAAGTGAGAGCAAACATGGATCATAA 3891 0.3796 MSHPTTSKYDVFLSFRGEDTRENFTSHLYKELYRKNIETFIDYKLGRGEEISPALLKAIEESDIYVVILSEHYASSTWCLEELTMILECRKKYGREIIPVFYKVDPSDVRHQRKSYADDFAKHEKQPADKVEAWRTALRKIADLSGMHSKNFSHESELVEEIAKDVLNKLKDCSLSDHQRMIGIEKHIQQIQSLLLLESPSVRIIGIWGMGGIGKSTIVSTIYRKLRTDFSSGSIVLNFKEEVERLGIDQVKRKCLSQLLDDKDATSSRSSFSSERRLERAKVLFILDDVSDCGQILGLIRHSKFGQGSRIIVTSRDKQVLHNVVDYIYHVKEMDFQDSLQLFCLSAFKQNHPKETYEGLSEKVLHYAKGVPLVLKIFGLLLHDKVKEIWESALKKLEKQTDVTAFNVLKLSYDGLDDEQKDIFLDIACFYRGHLVNVVAQTLDCCGFSAQYGMDVLKDRCLISNLEGRIVMHDLVQEMGQKIVRQQCVDNPGKRSRLWMADDIYTILRNNRGTDAIQCIFLDLCKIKKVEPHAETFKEMHNLRMIQFYNPSAFRKESNVIIRTVLKSLPDNLKFLRWDGFPQRSLPLDFCPENLVTLDMPHSRLEKLWDGDQDLPNLKRLNLSFSQKLIEVPDLYLSPNIEEIILSHCASLVQVHSSGFLDNLNCLCINGCIELRSLNLPSNILSKSSGLVVLHGCVNLETLVISSSRTEAVQSNSCSRFYGLWDFEAINVYGLSDEHEPKKDAGGYEIGEYSSRAFRPVDNADVYKNEEPLDNICLLNMKVKIDTMPSLFSSINQLCWLDISKCESLTFLPPEVFNLSFLRRLYLGGCLNLEELPEIKKSMENLTVLVLDKTAIRELPSSLNHLIRLEELSLKRCSRLMTIPSSIGNLSKLVKLDLTDCESLKTFPSSIFKLKLTKLDLHGCTMLRTFPEILEPAESFTLINLTKTAIQNLPSSFEYLVGLQTLRLNLCSNLVSLPNSIVKLNRLSVLDCSGCCRLTKIPNDIGCLSSLTKLSLQESGIMNLPESMSHLSNLESLDISDCKWLECIPNLPPRLNQFSAFDCQSIKTLEPNSKVKLLSTSKEGTFKFHFTNSQKLDETFSKNIGEVAWHKISDDAYRIVFFSFSGSAVPSWLPYSCKGNSVTMKKDSPYLWGYNRLVGFALCVVFRRANIEDTETRSTSFVYRLTFESNGETRYLPYQGLKLDIYWKDRSRYFIEDQTFLWKYQLDLASIGNELFHAYNFILEIQEDIRHLSSSTSNIIVKECGICPLYTKYSGSNVMRLLYNGNEGPSESKHGS 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06256 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 427 IPR027417 -
Vivi5g06256 1296 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 703 IPR044974 GO:0006952
Vivi5g06256 1296 Pfam Leucine Rich Repeat 594 613 IPR011713 -
Vivi5g06256 1296 Gene3D - 334 417 IPR042197 -
Vivi5g06256 1296 PRINTS Disease resistance protein signature 888 904 - -
Vivi5g06256 1296 PRINTS Disease resistance protein signature 368 382 - -
Vivi5g06256 1296 PRINTS Disease resistance protein signature 277 291 - -
Vivi5g06256 1296 PRINTS Disease resistance protein signature 204 219 - -
Vivi5g06256 1296 SMART till_3 8 144 IPR000157 GO:0007165
Vivi5g06256 1296 SUPERFAMILY RNI-like 573 851 - -
Vivi5g06256 1296 SUPERFAMILY "Winged helix" DNA-binding domain 406 508 IPR036390 -
Vivi5g06256 1296 Pfam NB-ARC domain 185 402 IPR002182 GO:0043531
Vivi5g06256 1296 ProSiteProfiles TIR domain profile. 7 170 IPR000157 GO:0007165
Vivi5g06256 1296 Pfam TIR domain 8 179 IPR000157 GO:0007165
Vivi5g06256 1296 Gene3D - 4 172 IPR035897 -
Vivi5g06256 1296 Gene3D Ribonuclease Inhibitor 508 735 IPR032675 -
Vivi5g06256 1296 Gene3D Ribonuclease Inhibitor 773 938 IPR032675 -
Vivi5g06256 1296 Gene3D Ribonuclease Inhibitor 939 1051 IPR032675 -
Vivi5g06256 1296 SUPERFAMILY L domain-like 784 1066 - -
Vivi5g06256 1296 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 172 - -
Vivi5g06256 1296 Pfam C-JID domain 1124 1272 IPR045344 -
Vivi5g06256 1296 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 146 IPR035897 -
Vivi5g06256 1296 Gene3D - 173 332 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06256 Vivi-Chr5 168758564 168763136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06256 5 906 WRKY Transcription Factor Family AT4G12020 31.243 6.90e-98 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06256 - - tpra:123916959 1342.79