Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06248 ATGAATTCAATTTTCTATGTTTTAGTACTAGTTCTTATTCTTCAAAATCCTCTTGTAACACAATGTCACAGCAAAGGTCTTCGACCAAAACCTTACAATGGAATTAATAACTCTGCAAACATGACCAAAGTTCAAGAATCAGAACAACAGTTCATGAAATGGGTGAAATTCATCGGTGCTCTCGATCACACCGTCTTTCGAACAGCGAAAAACAAGCTTTTTCCTTCTTATACTCTCAATGTCTATAAGAATTCCAAAAAAAGAGGGTTCTCATCTATTCAATCCGCCATTGATTCTCTTCCATTCATCAACCTAGTTAGAGTTGTCATCAAAGTTCATGAAGGTGTTTACACAGAGAAAGTTTACATTCCTCCATTGAAATCATTCATAACAATACAAGGAGCAGGTGCAGATAAAACAATTGTTCAATGGGGTGACACTGCTCAAACACCTAATCCTGGCGCAAAAGGACAAACATTAGGAACCTATGGTTCTGCAACTTTTGCTGTTAATTCACCTTATTTTATTGCTAAGAACATCACATTCAAAAACACTGCTCCAATTCCAGCACCAGGAGCAGTTGGAAAACAAGGTGTGGCATTGAGGATTTCAGCTGATAATGCAATATTTCTTGGATGCAAATTTTTAGGTGCACAAGATACTCTCTATGATCATCTTGGTAGACATTATTACAAAGATTGTTATATTGAAGGCTCCGTCGATTTCATATTCGGCAATGCGCTCTCTCTTTTCGAGGGTTGTCACGTGCATGCGATAGCAGAGAATACAGGGGCAGTAACAGCACAAGGAAGGAGCAGTATATTAGAGGACACGGGATTCTCATTTGTACACTGTAAGGTCACGGGATCAGGAGCACTATACCTTGGAAGGGCTTGGGGTCCTTTTTCTAGAGTTGTCTTTGCTTATACATACATGGACAATATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCCAATCGAGAAATGACTGTATTCTATGGACAATACAAGTGCACAGGACCAGGAGCAAGCTATGCAGGAAGAGTATCATGGTCAAGGGAACTCACTGATGAAGAAGCTAAACCTTTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATTAATTCATTCTTTTGA 1146 0.3901 MNSIFYVLVLVLILQNPLVTQCHSKGLRPKPYNGINNSANMTKVQESEQQFMKWVKFIGALDHTVFRTAKNKLFPSYTLNVYKNSKKRGFSSIQSAIDSLPFINLVRVVIKVHEGVYTEKVYIPPLKSFITIQGAGADKTIVQWGDTAQTPNPGAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADNAIFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAENTGAVTAQGRSSILEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINSFF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06248 381 Gene3D - 76 380 IPR012334 -
Vivi5g06248 381 SUPERFAMILY Pectin lyase-like 75 379 IPR011050 -
Vivi5g06248 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 74 378 - -
Vivi5g06248 381 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
Vivi5g06248 381 FunFam Pectinesterase 75 379 - -
Vivi5g06248 381 Pfam Pectinesterase 87 373 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06248 Vivi-Chr5 168615654 168620296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06248 2 377 Carbohydrate Esterase AT5G47500 43.236 9.43e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06248 K01051 - gmx:100802832 664.455