Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06233 ATGGGTAGAACCATTAGGTGGTTCAAGAGTTTTTTTGGGATAAAGAAAGATAGAGATAATCCAAATTCGAATTCTTCGAAATGGAATCCTCCTCTTGAAACATTCTCGAAGAGAGATTCAAGAGGTTTGTGTCATAATCCAGCAACTATACCACCTAACATTTCACCTGCAGAAGCTGCTTGGGTTCAATCGTTCTATTCAGAATCCGAGAAGGAGCAAAACAAGCACGCCATTGCTGTTGCAGCTGCCACAGCAGCAGCTGCAGATGCTGCCGTGGCAGCTGCTCAGGCTGCCGTGGCTGTTGTCAGACTAACCAGCCACGGCAGGGATACCATGTTTGATGGCGGACACCAGAAATTCGCTGCTGTCAAGATTCAAACCACATTTAGAGGCTACTTGGCAAGAAAAGCACTTAGAGCCTTAAAGGGTTTGGTAAAGTTACAAGCACTGGTGAGAGGGTACTTAGTGAGGAAGCAAGCAACAGCAACACTTCACAGTATGCAAGCTCTGATTAGAGCACAAGCAACCGTAAGATCTCATAAATCTCGCGGTCTCGTCATGAACACAAAGAATGAAACGCATAACAGATTTCCAGCACAAGCAAGAAGATCCACGGAAAAGTACAATCACAACGAGAGTAATAGGAATGAGTACACATCTTCAACTCCGGTCCACAGTAGAAGATTATCATCTTCTTTTGATGCTACTGTGAACAACAACAGCAACAACAATAATAGCAACAACAACAGTTATGATATTGGAAGTCCGAAAATAGTAGAAATCGATACTGGAAGACCGAAATCAAGGTCTAGAAGAAGCAACACATCAATTTCCGATTTTGGCGATGACCCGTCATTTCAAACACCTTCATCTCCACATCCAATTATGCCATCTCAGTTATTCATTCCAAGTCAAAGGAATTTCAGTGAATCGGATTGGGGAATAACAGGTGAAGAATGCAGATTTTCGACAGCGCAAAGCACTCCGCGTTTCACAAGTTCATGTAGTTGTGGATTTGTGGCACCTTCTACACCTAAAACAGTTTGTGGAGATAGTTTCTACATTGGTGAATATGGTAACTATCCTAATTACATGGCTAATACACAGTCTTTTAAGGCTAAATTGAGGTCTCATAGTGCTCCGAAGCAAAGACCGGAACCGGGTCCAAAGAAGAGGCTTACATTGAATGAACTTATGGAATCTAGAAACAGTTTGAGCGGAGTTAGAATGCAAAGATCTTGTTCACAGATTCAGGATGCTATTAATTTTAAGAATGCTGTTATGAGTAAATTAGATAAGTCCTCTGATTTTGATAGAAACTACTCCAACCAAAGGAGGTGGTGA 1344 0.4189 MGRTIRWFKSFFGIKKDRDNPNSNSSKWNPPLETFSKRDSRGLCHNPATIPPNISPAEAAWVQSFYSESEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRDTMFDGGHQKFAAVKIQTTFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSHKSRGLVMNTKNETHNRFPAQARRSTEKYNHNESNRNEYTSSTPVHSRRLSSSFDATVNNNSNNNNSNNNSYDIGSPKIVEIDTGRPKSRSRRSNTSISDFGDDPSFQTPSSPHPIMPSQLFIPSQRNFSESDWGITGEECRFSTAQSTPRFTSSCSCGFVAPSTPKTVCGDSFYIGEYGNYPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLTLNELMESRNSLSGVRMQRSCSQIQDAINFKNAVMSKLDKSSDFDRNYSNQRRW 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06233 447 SMART iq_5 140 161 IPR000048 GO:0005515
Vivi5g06233 447 SMART iq_5 117 139 IPR000048 GO:0005515
Vivi5g06233 447 MobiDBLite consensus disorder prediction 181 299 - -
Vivi5g06233 447 Pfam IQ calmodulin-binding motif 145 159 IPR000048 GO:0005515
Vivi5g06233 447 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Vivi5g06233 447 Gene3D - 116 169 - -
Vivi5g06233 447 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Vivi5g06233 447 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Vivi5g06233 447 MobiDBLite consensus disorder prediction 270 299 - -
Vivi5g06233 447 MobiDBLite consensus disorder prediction 196 213 - -
Vivi5g06233 447 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Vivi5g06233 447 MobiDBLite consensus disorder prediction 181 195 - -
Vivi5g06233 447 MobiDBLite consensus disorder prediction 214 254 - -
Vivi5g06233 447 Pfam Protein of unknown function (DUF4005) 329 407 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06233 Vivi-Chr5 168304501 168306484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06233 1 410 IQD Protein Family AT3G16490 49.038 9.32e-95 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06233 - - mtr:11413683 746.888