Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06217 ATGAACAAAAACATCATTCAAACTTTCCTCCACCTCCTTCTCCTCCTCCTCCTCCCAAATTCATCAAAAGCTTCCATTGGTGTAGGCATTGGTGTTGGCATTGGCCTTGGCAATGGTGGTCCTAACACTAACACTAACACCCCTATCCCTTCGGGATCATCTAAGCAAAATCTAAACAATGCTTACAAAGCTCTTCAAGCTTGGAAATCTTCAATCACCAATGACCCTTTAAACATTCTATCCACATGGGTTGGTCCCAATGTTTGTTCTTACAAAGGAATCTTTTGTGAAACCAGTACAACAACAACAACTACTACTACTACTCATGTTGTTGCTGGAATAGATCTCAACCATGCAAATCTTCAAGGCCCACTTGTCAAAGAACTCTCATTACTCTCCGATTTAACACTTCTTCATCTCAACACCAACAACTTCTCCGGCACAGTTCCAGAAACATTCCAAGACTTCACTTTCCTTCAAGAGCTAGACCTCAGCAACAACCATCTCTCAGGTTCTTTTCCGACAGTTACCTTAAACATGCCAAGCCTAATCTACCTAGACCTCAGATTCAACACCTTCAAAGGCTCACTTCCTGAAGAACTCTTCAACAAGAAACTCGACGCAATATTTCTCAACAACAATCAATTCAGCGGCGAAATACCTCAAACCTTCGGAAACTCACCTGCATCAGTGATCAACTTAGCCAACAACAGATTAACAGGAAACATACCGATAAGTTTCGGTTTCATGAGTCCTAAACTGAGAGAGATTATTTTCCTGAACAATCAGTTATCTGGCTGTATTCCTCAAGGTGTTGGCGTGTACACAGAAATGCAGGTTCTTGATTTGAGTTTCAACTCTCTTGTGGGTCATTTACCTGATACGATATCGTGTTTGCGAGATATAGAAGTTCTTAATCTAGGACATAACAAGCTTTCTGGTGATATATCTGATGTTGTATGTTCTTTGAGAAGCTTGTTGAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAAGAATGTTGGAGGCTTTTCAATATTGGTTTTGATTTCTCGGATAATTGTATTCCTGGTAGGAATTTGCAGAGACCTGAACCTGAGTGTTCTTTGATTCCTGGTGGTGATTTGAGTTGTCTTAGAATTCCTAGTCCAAAACCTCTTGTTTGTGCTAGTTTGGCTTCAAGTATTGACTCATCATCACCTTGA 1212 0.401 MNKNIIQTFLHLLLLLLLPNSSKASIGVGIGVGIGLGNGGPNTNTNTPIPSGSSKQNLNNAYKALQAWKSSITNDPLNILSTWVGPNVCSYKGIFCETSTTTTTTTTTHVVAGIDLNHANLQGPLVKELSLLSDLTLLHLNTNNFSGTVPETFQDFTFLQELDLSNNHLSGSFPTVTLNMPSLIYLDLRFNTFKGSLPEELFNKKLDAIFLNNNQFSGEIPQTFGNSPASVINLANNRLTGNIPISFGFMSPKLREIIFLNNQLSGCIPQGVGVYTEMQVLDLSFNSLVGHLPDTISCLRDIEVLNLGHNKLSGDISDVVCSLRSLLNLTVAYNFFSGFSQECWRLFNIGFDFSDNCIPGRNLQRPEPECSLIPGGDLSCLRIPSPKPLVCASLASSIDSSSP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06217 403 Gene3D Ribonuclease Inhibitor 58 230 IPR032675 -
Vivi5g06217 403 FunFam Leucine-rich repeat extensin-like protein 1 62 226 - -
Vivi5g06217 403 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Vivi5g06217 403 SUPERFAMILY L domain-like 61 348 - -
Vivi5g06217 403 PRINTS Leucine-rich repeat signature 299 312 - -
Vivi5g06217 403 PRINTS Leucine-rich repeat signature 159 172 - -
Vivi5g06217 403 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 387 - -
Vivi5g06217 403 Gene3D Ribonuclease Inhibitor 231 372 IPR032675 -
Vivi5g06217 403 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06217 Vivi-Chr5 168125128 168126523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06217 58 371 Leucine-rich Repeat extension Gene Families AT3G24480 51.274 7.32e-104 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06217 - - gmx:100786358 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06217 5 168125128 168126523 Vivi5g06217 5 168125128 168126523 ECH