Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06215 ATGAAGATTGAGGAATTGGATGATGCAGAGTGTAGTAGGGATGAAGAAGAGAATTTGGAGAGACAAATTGTTAGGGTTGATGCGAAGAGAGCGTTGGTTGGTGCAGGTGCACGGATTCTGTTTTATCCTACACTTTTGTATAACGTGCTGAGGAATAAAATGGAAGCTGAGTTCAGATGGTGGGATCAAATTGATGAGTTTTTGTTGCTGGGTGCAGTACCGTTTCCTAAAGATGTTCCTCACTTGAAGAACCTTGGTGTTGGCGGTGTAATTACTTTGAATGAACCATATGAAACTTTGGTACCATCTTCATTGTATCGTGCTCACGGGATCGATCATTTGGTAATTCCCACAAGAGATTATCTCTTTGCTCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATAATAATGCTACTTGTGGTAAAACAACTTACGTTCACTGTAAAGCTGGACGTGGGAGGAGTACAACAATTGTGCTTTGTTATTTGGTTGAATACAAGCACATGACTCCTGCGGCTGCCCTTGAGTATGTGCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAAAGTTATAACAACCAAAGACCTTCTCCTTTACCACAGGCTGTTCAAAGCTATAACAATCAAAGACCTTCTCCTTTACCACCATCTCCTTCTGGAGACACAGTTCTCATAACCAAAGATGATCTTGAAGGCTATCATAGTACGTCTGATACAAGTATGGAGCTAGCTATTGTTCCTAAAGTTCCAAAGACTAAGCCCATGATAGCACGGTTATCTTGCCTTTTTGCATCCTTAAAAGCATCCAGTAGTAGTGTTCCAATGACAAGGCGGCTGCCAGTTTCAGAGTCGCGTGCTTGCTAA 894 0.4284 MKIEELDDAECSRDEEENLERQIVRVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDQIDEFLLLGAVPFPKDVPHLKNLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHNNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQSYNNQRPSPLPQAVQSYNNQRPSPLPPSPSGDTVLITKDDLEGYHSTSDTSMELAIVPKVPKTKPMIARLSCLFASLKASSSSVPMTRRLPVSESRAC 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06215 297 Pfam Dual specificity phosphatase, catalytic domain 84 203 IPR000340 GO:0008138|GO:0016311
Vivi5g06215 297 Coils Coil 9 29 - -
Vivi5g06215 297 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Vivi5g06215 297 MobiDBLite consensus disorder prediction 201 220 - -
Vivi5g06215 297 CDD PTPMT1 60 204 IPR044596 GO:0004721
Vivi5g06215 297 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Vivi5g06215 297 MobiDBLite consensus disorder prediction 201 232 - -
Vivi5g06215 297 Gene3D Protein tyrosine phosphatase superfamily 60 206 IPR029021 -
Vivi5g06215 297 FunFam Dual specificity phosphatase domain protein 60 207 - -
Vivi5g06215 297 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Vivi5g06215 297 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Vivi5g06215 297 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 202 IPR029021 -
Vivi5g06215 297 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06215 Vivi-Chr5 168094862 168097565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06215 2 277 Protein tyrosine phosphatase (PTP) family AT2G35680 50.794 2.69e-101 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06215 - - vvo:131603803 602.053