Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06212 ATGATGAATAAGATGACCAGCTCTGATCTCATAGATTCTAAGCTTGAAGAACATCAATTGTGTGGATCCAAACACTGCCCTCGCTGCGGTCACAAGTTCGATCAAGGCAAACCGGATTGGTTAGGTCTACCAGCCGGAGTGAAATTTGATCCAACAGATCAAGAACTTATCGAACATCTCGAAGCGAAGGTCGAATCGAAGAACAACATGAAATCACATCCTTTGATAGATGAATTCATTCTCACTATTGAAGGTGAAGACGGAATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGATTAAGCAGACACTTTTTCCACAGACCTTCAAAGGCTTATACGACGGGAACACGAAAGAGACGAAAGATTCAAACCGAAGAATGTGATTTACAAGGAAGTTCAGGAGGTGAAACAAGGTGGCACAAAACTGGAAAAACAAGGCCTGTTATGGTTAACGGAAAACAAAAAGGCTGCAAGAAGATTCTAGTCCTCTACACGAATTTCGGGAAGAATCGAAAGCCTGAGAAGACGAACTGGGTTATGCATCAGTATCATTTAGGACAGCATGAAGAAGAGAAAGAAGGAGAGCTGGTTGTTTCGAAGATATTTTATCAGACGCAGCCGAGACAGTGTAATTGGTCTGATAATAATCATAGAATTGGTGCAACAACGACGGCAACCGGTGAAGGAAGTGGCGGTGAACCTAATAATGTTATCAATGCAAATGCAAGAAGAGATAGTGGAAGTGGAAGTTCTTCTTCTAAGGAGATTGTAACTCATCATAATCATAATCAGATTTATAGAGACGAAATGTCTGCTGCTGCCGTTGCTGTTGCCGCTGTTGCTGGTGTCCCAGCTCCTTTAACAAGCTTCACAAATGCTTTGGATATTCAGCATCTTAAATCCGATCATTTCGGCTTCATCCCGTTTCGGAAAAACAGCTTCGATGAGGTTGGAATAGGAGAAGGTTCTAATGCAAGAGAAATGCAAGCATCAGGATCATGTGATCAGGAGCAGCATCATGTAGTAACACATCATCATCATCAACATCATCAACAACAACAGCAACAGCAACAACAACATGAACATCATGTGCAACAACAAATTAATGCAAACGCAGCTTTCCATATCAGTAGGCCTTCAAATCCAATCTCAACTATCATCTCTCCACCTCCACTTCACCATACATCCATCATCCTTGATGATAATTCTTACCATGTCTCAACAATCATGCTCCAAAATGAGAATTTCCAGCAACAACAACAGCAGCAACAACATCATAAACTAGGTGGTGGAAGGTCTGCGTCTGGTTTGGAAGAAGTCATCATGGGTTGCACTTCAACATCTTCTGATACTATCAAAGAGGAATCATCTATGAGAAACCAGCAAGAAGCAGAATGGTTGAAATACTCATCTTATTGGCCAGTTGACCCTCCTCCTCATGACAACCATAATCACCATCATCATCATAATCATCATCATCATCAACATCATGATCAATAG 1515 0.4145 MMNKMTSSDLIDSKLEEHQLCGSKHCPRCGHKFDQGKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNNMKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDLQGSSGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDNNHRIGATTTATGEGSGGEPNNVINANARRDSGSGSSSSKEIVTHHNHNQIYRDEMSAAAVAVAAVAGVPAPLTSFTNALDIQHLKSDHFGFIPFRKNSFDEVGIGEGSNAREMQASGSCDQEQHHVVTHHHHQHHQQQQQQQQQHEHHVQQQINANAAFHISRPSNPISTIISPPPLHHTSIILDDNSYHVSTIMLQNENFQQQQQQQQHHKLGGGRSASGLEEVIMGCTSTSSDTIKEESSMRNQQEAEWLKYSSYWPVDPPPHDNHNHHHHHNHHHHQHHDQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06212 504 ProSiteProfiles NAC domain profile. 43 209 IPR003441 GO:0003677|GO:0006355
Vivi5g06212 504 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 6 371 IPR044799 GO:0003700
Vivi5g06212 504 MobiDBLite consensus disorder prediction 346 370 - -
Vivi5g06212 504 MobiDBLite consensus disorder prediction 482 504 - -
Vivi5g06212 504 FunFam NAC domain-containing protein 73 52 213 - -
Vivi5g06212 504 Gene3D NAC domain 52 213 IPR036093 GO:0003677|GO:0006355
Vivi5g06212 504 MobiDBLite consensus disorder prediction 489 504 - -
Vivi5g06212 504 Pfam No apical meristem (NAM) protein 44 190 IPR003441 GO:0003677|GO:0006355
Vivi5g06212 504 SUPERFAMILY NAC domain 39 209 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06212 Vivi-Chr5 168052706 168057453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06212 4 478 NAC Transcription Factor Family AT5G56620 49.692 1.41e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g06212 NAM 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06212 - - vvo:131603801 881.708