Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06202 ATGACTGAGATGGTGCAAAGTAAATATATATCTTTATCCAAATCCAAAACATCTTCCATCACCATGTCGATGATGATGTTAGGGGAACCACCCCATCGTTCAAATCCAACCCTACACGTGGCACCGGCACCATGGCCAGTTATGAACAATCCTACGGCGGAGATCTTTTCTGATGATTATTCTCAGTTTTATTTTGAAGAAGCAATGAACGCTCTTCAACACTGTGTTCCTTCCATGGAGGACGAAGACGATTCTGACTCGGAGATTTTTCCGAGTCATGACTCGGTGGATGCTTACACGAATGACCATTTTCGTATGTTTGAGTTCAAGATACGGAGATGCGCACGTGGTAGGTCACATGACTGGACGGAGTGTCCCTTCGCTCATCCCGGTGAGAAGGCTCGCCGTCGTGACCCGAGGAGGGTTCCATATTCTGGGACTTCGTGTCCGGAGTTTCGTAAAGGAAGTTGCAAGAAAGGCGATTTGTGTGAGTTCGCGCATGGGGTTTTCGAGTGCTGGCTTCATCCTTCACGTTACCGGACTCAGCCATGCAAAGACGGAACAAGTTGCCGGCGACGTGTTTGTTTCTTTGCTCACACGGCTGAACAACTCAGGGCTCCGACGAGTCTTCAGAGTCCGTTGAGTGTTAACTCCGTCGAGTCTTATGACGGTTCTCCTCTCCGGCTTGCCATTGAATCCTCCTGTGTTAAAAAGCTTCGGTTCATGTCTTCTCCCGGTTCTGTTTCTCCGCCGGCGGAGTCTCCTCCGTCATTGGGAAGGTCACCGGGTTCTGTGAATGAGATGGTGGCTTCGCTGCGAAACTTGCAACTCGGTAAGATGAAATCTTTACCTTCTTCATGGAATGTTCAAATGGGTTCTCCTCGGTTCGGGTCTCCAAGAGGACCCCTGATCCGACCCGGATTCTGTAGCCTTCCATCAACGCCGACTCAGCCACCGAGTCGCGGCGGGGTTAACCATTTCGACCTTTGGGATCAAAGCTGTGAAGAGGAGCCTGTGATGGAGAGAGTGGAGTCTGGTAGGGATATTAGGGTGAAGATGTTTGAGAAACTGAGCAAAGAGAACTCGTTTGATGGATCCGGGTCGGGTCTGAATTCGGAACAGGTAAATGGGGCTCCGGATATTGGGTGGGTTTCGGAGCTTGTCTGA 1167 0.503 MTEMVQSKYISLSKSKTSSITMSMMMLGEPPHRSNPTLHVAPAPWPVMNNPTAEIFSDDYSQFYFEEAMNALQHCVPSMEDEDDSDSEIFPSHDSVDAYTNDHFRMFEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRRVPYSGTSCPEFRKGSCKKGDLCEFAHGVFECWLHPSRYRTQPCKDGTSCRRRVCFFAHTAEQLRAPTSLQSPLSVNSVESYDGSPLRLAIESSCVKKLRFMSSPGSVSPPAESPPSLGRSPGSVNEMVASLRNLQLGKMKSLPSSWNVQMGSPRFGSPRGPLIRPGFCSLPSTPTQPPSRGGVNHFDLWDQSCEEEPVMERVESGRDIRVKMFEKLSKENSFDGSGSGLNSEQVNGAPDIGWVSELV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06202 388 MobiDBLite consensus disorder prediction 361 375 - -
Vivi5g06202 388 FunFam Zinc finger CCCH domain-containing protein 66 101 169 - -
Vivi5g06202 388 MobiDBLite consensus disorder prediction 244 264 - -
Vivi5g06202 388 Gene3D - 144 207 - -
Vivi5g06202 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 168 IPR000571 GO:0046872
Vivi5g06202 388 ProSiteProfiles Zinc finger C3H1-type profile. 143 170 IPR000571 GO:0046872
Vivi5g06202 388 MobiDBLite consensus disorder prediction 361 388 - -
Vivi5g06202 388 PANTHER UNKEMPT FAMILY MEMBER 68 388 IPR045234 -
Vivi5g06202 388 SMART c3hfinal6 178 201 IPR000571 GO:0046872
Vivi5g06202 388 SMART c3hfinal6 143 169 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06202 Vivi-Chr5 167875280 167876676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06202 99 205 C2H2 Transcription Factor Family AT5G12850 71.028 3.59e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g06202 zf-CCCH 3.2e-05 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06202 5 167875280 167876676 Vivi5g06202 5 167875280 167876676 ECH