Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06192 ATGGGGAGAAGGATACTGAATGATGCGTTGAGAAGTATGGTGAATGCTGAGAAGAGAGGGAAAGCTATGGTGGAGCTTAAACCTATATCCAATGTCATCTCTTCCTTTCTTCATATCATGAAACACCGCGGATATATCAAGGACTTCCAGGTCTATGATCCCCATAGAGTGGGGAGGATCACTGTTGAACTACAAGGTAGACTTAACGATTGCAAGGCCCTTACATACCGACAAGACTTAAAGGCAAAGGATATTGAAGCCTACAGACTGCGTACTCTTCCAACAAATCAGTGGGGTTATGTTGTGATTACAACCCCCGATGGTGTTTTGGATCATGAAGAGGCTGCAAAAAGGAATGTAGGTGGTCAAGTTCTTGGTTACTTTCACTAA 390 0.4333 MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLHIMKHRGYIKDFQVYDPHRVGRITVELQGRLNDCKALTYRQDLKAKDIEAYRLRTLPTNQWGYVVITTPDGVLDHEEAAKRNVGGQVLGYFH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06192 129 Gene3D - 2 68 - -
Vivi5g06192 129 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 128 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vivi5g06192 129 SUPERFAMILY Ribosomal protein S8 3 129 IPR035987 GO:0003735|GO:0005840|GO:0006412
Vivi5g06192 129 Gene3D - 69 129 - -
Vivi5g06192 129 Pfam Ribosomal protein S8 6 127 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vivi5g06192 129 FunFam 40S ribosomal protein S15a-5 69 129 - -
Vivi5g06192 129 FunFam 40S ribosomal protein S15a 1 68 - -
Vivi5g06192 129 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06192 Vivi-Chr5 167744927 167748053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06192 1 129 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 82.171 6.05e-80 229