Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06182 ATGGAAAATTGCCGTCAGAATCCATCACAAGTGGACAGTTTTTCTAAGAACAAGGAGCACTTCGATTTGATTCTGGTTGATAAAGAGGGAACTGATATACATTGTAGAGTACCAACTGCGCTTAAACAGACTTTTGATTCTGTTTTAACAGTTAACAACACATATACCATCTCAAATTTCCAGGTTATGCTGAATGATCTTATGTTCAAGCCTTCCCAACACAAATATATGTTAACTTTCACTGGTGGCACTTCTGTGTCTGACAAGAACAAGCACGACATACCACAAAAACCACTCATCTTCACTCCTTTTTGTGATATCCTAGCCGGCAAGGGGAAAAATGATGTCTTGATAGATATCATAGGAATTGTTGTGGAAATTGGATACAGCCAGATTCACAATTCGACCAAAAAACAGCAGGTCAATTTGGTCCTCAAGGATTTAGGAAACAACATCTTGAACTGTACGTTATGGGAAAGTTATGCCGTACAGTTTCATGATTTCAACACTACAAGAAAAGATTTCACAGGTCCAACGGTTATCATCTTGCAGTTTGCAAGAGTCAAAGAAGAAGGAAAATACCCTTTATGTGTCTCAAACACTTTCAACGTTACTAAATTACACATTAACGATGATTTGCCTGAGATTCAAGACTTCTTAAAGAGCATCCAAAAACTCCCATTGGGCGAAATAGGATCCCAAAGTATGACTGCGCTTTCACAACAGTCACAAACAAGCGGTTCTATTCAGCTTAGCCCGTTAGACAAGTTCATGTATAAAGCTATGGTAATCCCTCTGTCTGATGTTGTCAAACTTAAAGACGAAACTCAGTGTATTACTATAGCTGAAACTCTTAGAATCAAAGCTGCACCTGGGGGATGGTTTTACCGTGCCTGCCATGCCTGTCCAAGAGTTGCTAAGGGCAATCAACCCCCATATGTTTGTGGCAAGGGTCACGGTACAGAGACTGAGATTTACAGGTATAAAATTCTAATTGATGTTGTGCACAATGGGTGTGAGACAACGTTTGTTTTATGGGACCGCGAATGTTTGCAACTGTTGAAGGTTACTTCGGCACAGATGCGCGCAACCATGCTTGAGGCTGGCATCACGGATCCCCTTGAGTTCCCTTTAGCACTTGACGGTTTGGTCGGCCTCAAATTGGTGTTTAAAGTCAAGTGGCAGCCTTCATGGAACAATGCTACTGTGGTATCCATCTACGATGATAAAGCTGCCTTCAAGCAATTAGAGGATTCAATGGACCAAGCTCTGGCACCGTCTTTATCATCTCCAACACCAAACAAAATGCAGGCACCATCTCTATCATCTCCAACACCAAACAAAATGCAGGTACCATCTCTGTCATCTCCAACGCCAAACAAAATGGAGATTGTTGAAACTGTGACTGAATCTTTGCCGATTGACGATTGGAATATGGTTGATCAGGACATTGATGTAACATCCAACCAGATCATGCTGACGCCTGCCCCAAGTGCAACTTCAAAAAATGATGCCTCCCAACTATCTACCGACAACAGCCCTATGCCAACAACACCAGCTGCAACAGCAAAAAGAATTGCACCTCAAGTATCATCTGATGACACTTTGGCTACTGCATTCTGTGAAGAACAAGGTTCTTCTACCAAATTGAAGAAGATAATCAAGTTGGAAAAAAATTCTCAAGACAACTTACAAGCTTAG 1701 0.4145 MENCRQNPSQVDSFSKNKEHFDLILVDKEGTDIHCRVPTALKQTFDSVLTVNNTYTISNFQVMLNDLMFKPSQHKYMLTFTGGTSVSDKNKHDIPQKPLIFTPFCDILAGKGKNDVLIDIIGIVVEIGYSQIHNSTKKQQVNLVLKDLGNNILNCTLWESYAVQFHDFNTTRKDFTGPTVIILQFARVKEEGKYPLCVSNTFNVTKLHINDDLPEIQDFLKSIQKLPLGEIGSQSMTALSQQSQTSGSIQLSPLDKFMYKAMVIPLSDVVKLKDETQCITIAETLRIKAAPGGWFYRACHACPRVAKGNQPPYVCGKGHGTETEIYRYKILIDVVHNGCETTFVLWDRECLQLLKVTSAQMRATMLEAGITDPLEFPLALDGLVGLKLVFKVKWQPSWNNATVVSIYDDKAAFKQLEDSMDQALAPSLSSPTPNKMQAPSLSSPTPNKMQVPSLSSPTPNKMEIVETVTESLPIDDWNMVDQDIDVTSNQIMLTPAPSATSKNDASQLSTDNSPMPTTPAATAKRIAPQVSSDDTLATAFCEEQGSSTKLKKIIKLEKNSQDNLQA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06182 566 CDD RPA1_DBD_B_like 119 222 - -
Vivi5g06182 566 CDD RPA1_DBD_A_like 16 86 - -
Vivi5g06182 566 PANTHER OS03G0429900 PROTEIN 19 495 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi5g06182 566 Pfam Domain of unknown function DUF223 23 117 IPR003871 -
Vivi5g06182 566 SUPERFAMILY Nucleic acid-binding proteins 101 223 IPR012340 -
Vivi5g06182 566 Gene3D - 92 226 IPR012340 -
Vivi5g06182 566 Gene3D - 245 422 IPR012340 -
Vivi5g06182 566 SUPERFAMILY Nucleic acid-binding proteins 15 86 IPR012340 -
Vivi5g06182 566 MobiDBLite consensus disorder prediction 495 531 - -
Vivi5g06182 566 Gene3D - 5 88 IPR012340 -
Vivi5g06182 566 MobiDBLite consensus disorder prediction 424 460 - -
Vivi5g06182 566 SUPERFAMILY Nucleic acid-binding proteins 274 407 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06182 Vivi-Chr5 167626164 167630336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06182 21 378 Core DNA Replication Machinery Family AT5G08020 22.372 3.47e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06182 - - vvo:131608135 1135.17