Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06173 ATGAATAGACTAAAGGGTCGTGGTTATTATGATGAAGATATGAGTTCTTGTTCTAAGGTGGTTGTTGTTGCGGTGAAAGGTTCGAAAGATATTTCAAAGACTGCTCTGGTTTGGGCTTTGACTCATGTTGTTCAACCTGGGGATTGCATTAAGCTTTTGGTTGTCATTCCTGCAATTTCATCAAGGAAGAAGGTATGGGGAATTTCAAGATTTACGACTGATTGTGCTACGAGTAATTGGACATCGCGATTAGGAACTGTTTCGGATCAGAAAGAAGTTATTACGAATTCGTGTTCTCAATTAGTACTTCAGCTTCATGATTTTTATGATCCGGAGAAGATAAAGATCAGAGTGAAGATTCTTTCTGGTTCGCTGTGCGGTGCGGTGGCGGCTGAAGCCAAGAGAGTTCAGTCAAGCTGGGTTATATTGGACAGAAAACTGAAAGGTGAACAGAAACATTGCATGGATGAGCTGCATTGCAATATTGTAATGATGAAGCATTCTCACCCGAAGATTCTGCGTTTGAATTTGAATAGTTCGCCTAAGAAGGAACTCGGAAGAGATTGTTCACTGTCGCTAGAGCCGAATGCGTATAGAAATTTGAAAGACAATTTTGAATATTCAGATATAATCAAAGGTCCAGCAGTTACTCCTGCTAGTAGTCCTGAACAAGGGTCGCCACCATTGACTGTAACTGATATTGGAACAGCGTCGATATCAAGCTCCGATCCTGGAACGTCCCCGTTTTTTCACTCTGACAATTATGAAAGACGAAGGAGATGTTTTCCCTTTGTCGTTCACGAGGGACTGGCGAACCTCGAGGAATCTGACTCGGAGAGTGAAAAGCTAAGTTCATCGTCGAAAAGTTCGTCTTTTCAGCCATGGATTTCGAATGTAATTTGTGTAGGCGGCGAGTACTCAAAACACGAGGACAATATTCAAAGATGTAGTGATAGTAAGGCTTTGGTTTCTACCTATGAAGCTTTGCTTCATAAACTCACGATTTTGGATCAAGATCCTATCTTCGGAGTTCCTGCTTGTAAAATTGACGTGAACTTAAGCAAAAGCGTTCGAGAAGTGATTTCACTCGCTAGAAATGCGCCTCACGGACCTCCTCCATTGTGCTCTATTTGTCAGCACAAAGCACCTGTATTTGGGAATCCTCCGAGGTGGTTTACATTTGCGGAATTACAACTTGCCACGGGTGGTTTTTCGCAAGCAAACTTTTTGGCCGAAGGTGGTTTTGGTTCGGTACACCGCGGTGTGTTACCTGAAGGACAAGTTGTTGCTGTTAAGCAGTATAAATTAGCCAGTACTCAAGGAGATAAAGAGTTTTGCTCAGAAGTAGAGGTCTTAAGCTGCGCACAACACCGCAATGTTGTGATGCTAATTGGATTCTGTGTTGAGGATGGAAGAAGATTGCTAGTTTATGAGTATATCTGCAACGGGTCGCTGGATTCTCATCTCTACGGACGGATGCAGAATGTGCTTGATTGGTCTGCACGCCAGAAAATCGCGGTTGGAGCAGCTCGTGGTTTGAGATATCTTCATGAGGAATGTAGAGTTGGTTGCATTGTACACCGTGATTTGCGGCCTAACAATATTCTCCTCACTCATGATTTTGAAGCATTAGTGGGAGATTTCGGACTTGCTAGGTGGCAGCCAGATGGAGATATGGGTGTGGAAACACGGGTGATAGGAACATTCGGGTATTTGGCACCAGAGTATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGATGTGTATTCATTTGGGATAGTATTACTAGAGCTTGTGACAGGTCGGAAAGCTGTGGATATTGGCCGGCCGAGGGGCCAGCAATGCCTTAGCGAATGGGCACGGCCATTGCTTGAAGAACAAGCAATTGATAAACTTGTAGATCCGAGCATAGGAAAGTGCTATGTTGATCAAGAGGTTTATCGCATGATGCAATGTTCGTCTATGTGTATCCGACGAGATCCACATTTAAGGCCTCGAGTGTCTCAGGTGCTCAAGATGCTGGAAGGTGACATTCTCATGTGA 2043 0.4371 MNRLKGRGYYDEDMSSCSKVVVVAVKGSKDISKTALVWALTHVVQPGDCIKLLVVIPAISSRKKVWGISRFTTDCATSNWTSRLGTVSDQKEVITNSCSQLVLQLHDFYDPEKIKIRVKILSGSLCGAVAAEAKRVQSSWVILDRKLKGEQKHCMDELHCNIVMMKHSHPKILRLNLNSSPKKELGRDCSLSLEPNAYRNLKDNFEYSDIIKGPAVTPASSPEQGSPPLTVTDIGTASISSSDPGTSPFFHSDNYERRRRCFPFVVHEGLANLEESDSESEKLSSSSKSSSFQPWISNVICVGGEYSKHEDNIQRCSDSKALVSTYEALLHKLTILDQDPIFGVPACKIDVNLSKSVREVISLARNAPHGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLPEGQVVAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRMQNVLDWSARQKIAVGAARGLRYLHEECRVGCIVHRDLRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDIGRPRGQQCLSEWARPLLEEQAIDKLVDPSIGKCYVDQEVYRMMQCSSMCIRRDPHLRPRVSQVLKMLEGDILM 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06173 680 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06173 680 SUPERFAMILY Protein kinase-like (PK-like) 384 675 IPR011009 -
Vivi5g06173 680 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
Vivi5g06173 680 MobiDBLite consensus disorder prediction 216 250 - -
Vivi5g06173 680 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Vivi5g06173 680 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Vivi5g06173 680 Pfam Protein tyrosine and serine/threonine kinase 408 674 IPR001245 GO:0004672|GO:0006468
Vivi5g06173 680 SMART tyrkin_6 404 674 IPR020635 GO:0004713|GO:0006468
Vivi5g06173 680 Gene3D Transferase(Phosphotransferase) domain 1 480 678 - -
Vivi5g06173 680 MobiDBLite consensus disorder prediction 219 249 - -
Vivi5g06173 680 PANTHER OS01G0750732 PROTEIN 159 678 - -
Vivi5g06173 680 CDD STKc_IRAK 410 676 - -
Vivi5g06173 680 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06173 Vivi-Chr5 167526105 167529739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06173 354 670 Trihelix Transcription Factor Family AT1G68690 49.844 9.60e-103 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vivi5g06173 PK_Tyr_Ser-Thr 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06173 - - aprc:113855006 1142.1