Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06171 ATGGGAAGAAGAAAATGTTCACATTGTGGTAAAATAGGACATAATTGTAGGACATGCACATCCTTCACCACAAAACTTGTAGGACTTCGTCTCTTTGGTGTCCAACTTTCCTCCTCCTCATCATCATCTAATACCATCATCAAGAAAAGCTTTAGCATGGACACTTTTCCCTCACCAACCTCTTCATCTTCCTCATTCTCTTCATCAACCATTCATGATAATCATCATCACAAATCCACCTCTAATCTTGCCTATCTATCTGATTGCTTTATAGGTCCACCCCAAGAGAGGAAGAAAGGAGTTCCATGGACAGAAGAAGAACATAGAATATTTCTTGTTGGATTAGAAAAGCTTGGAAAAGGAGACTGGAGAGGTATCGCTAGAAACTTTGTCACTACAAGAACTCCTACACAAGTCGCAAGTCATGCTCAAAAATATTTTATCCGATTAGCAACTCTCAATAACAAGAAACGGCGATCAAGTCTCTTTGACTTGGTTGGGAGCAAGAACACCAAGAGAGAAGGACAAGGTCATAAATTAGAGGATACTAAGTGTAATTGTGAAGTTGAAAAAGAAGAAGAAACCAAATTAGATACACAAGAAATTAATTACTCTAAAGTTAATTGGTTACATAATCATCATTCTTCAAATTATGTAGCAGTGCCTAATTTGGACCTTACACTTGCTGTTGCACCCCCTAAGGCTAATCAACCCTCTCCAGCTGGCCCATTTCTTCTAGGCCCAATTAGGGTCACTTAA 759 0.3887 MGRRKCSHCGKIGHNCRTCTSFTTKLVGLRLFGVQLSSSSSSSNTIIKKSFSMDTFPSPTSSSSSFSSSTIHDNHHHKSTSNLAYLSDCFIGPPQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGIARNFVTTRTPTQVASHAQKYFIRLATLNNKKRRSSLFDLVGSKNTKREGQGHKLEDTKCNCEVEKEEETKLDTQEINYSKVNWLHNHHSSNYVAVPNLDLTLAVAPPKANQPSPAGPFLLGPIRVT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06171 252 SUPERFAMILY Homeodomain-like 96 151 IPR009057 -
Vivi5g06171 252 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Vivi5g06171 252 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677
Vivi5g06171 252 CDD SANT 102 147 IPR001005 -
Vivi5g06171 252 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Vivi5g06171 252 PANTHER TRANSCRIPTION FACTOR KUA1 3 211 - -
Vivi5g06171 252 SMART sant 99 149 IPR001005 -
Vivi5g06171 252 Gene3D - 101 153 - -
Vivi5g06171 252 ProSiteProfiles SANT domain profile. 103 151 IPR017884 -
Vivi5g06171 252 FunFam transcription factor MYB1R1 101 152 - -
Vivi5g06171 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06171 Vivi-Chr5 167501989 167503154 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi5g06171 Myb_DNA-binding 9.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06171 - - cam:101500241 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06171 5 167501989 167503154 Vivi5g06171 5 167501989 167503154 ECH