Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06143 ATGGCTATTTCATCATCATCATCATCACTATCGCTATCTCTTCCATTCCAATTCCGTTTCTCTCTTAAACCCCAAACCCGCCGCAACTTCCCTTGCGTTGCGGCGGCGACGGCGGCGAACAGCGATGTTCCTCTCCTTCAAGTCAATGATCTTAGAGCAAAAATCGTAGAATCCAATCTCGAAATTCTCAAAGGCGTTAATCTCACTGTCAACAGGGGCGAGGTTCACGCTATCATGGGGAAGAACGGTTCTGGGAAAAGCACGTTCGCTAAGGTTCTTGTGGGTCATCCGGATTATGAAGTTACCGGTGGGAGCGTTGTGTTTAAAGGAGAGAATTTGCTTGAGATGGAGCCGGAGGAAAGAGCGCTTGAAGGGCTTTTCATGAGTTTTCAGTCGCCGGTTGCGATTCCGGGGGTTTCGAATGATCAATTTCTTGTTATGGCGTATAATGCGAGGAGGAAGAAACTTGGGCTTCCTGAACTTGGACCCCTTGAGTGTTTTTCTTATCTGATGGAGAAGCTACAACTTGTGAACATGAAGCCTGACTTTCTCAATAGGAATGTAAATGAAGGGTTTAGTGGAGGTGAACGAAAACGCAATGAAATCCTGCAGCTTGCGGTTTTGGGGGCAGATTTGGCTATTTTGGATGAAATTGATTCGGGATTGGATGTTGATGCGCTCAGGGATGTGGCAAGTGCAGTTAATAAAATTCTTACCCCGGAGAATTCTTTGTTGATGATTACTCACTATCGGCGGATTCTTGATCTTTTGAAACCTTCCCATGTTCATGTTATGGACAATGGCAAAATTGCAAGGACAGGCGACCTATCTATGGTAGATGCAATTGAGGCAGATGGATACGAACCAGTCTCCGCTTTACTTTAA 885 0.4554 MAISSSSSSLSLSLPFQFRFSLKPQTRRNFPCVAAATAANSDVPLLQVNDLRAKIVESNLEILKGVNLTVNRGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNKILTPENSLLMITHYRRILDLLKPSHVHVMDNGKIARTGDLSMVDAIEADGYEPVSALL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06143 294 Pfam ABC transporter 63 217 IPR003439 GO:0005524
Vivi5g06143 294 NCBIfam Fe-S cluster assembly ATPase SufC 46 288 IPR010230 GO:0005524
Vivi5g06143 294 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 292 IPR003439 GO:0005524
Vivi5g06143 294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 276 IPR027417 -
Vivi5g06143 294 ProSitePatterns ABC transporters family signature. 192 206 IPR017871 GO:0005524|GO:0016887
Vivi5g06143 294 SMART AAA_5 72 269 IPR003593 GO:0016887
Vivi5g06143 294 Gene3D - 45 291 IPR027417 -
Vivi5g06143 294 CDD ABC_FeS_Assembly 46 287 IPR010230 GO:0005524
Vivi5g06143 294 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 26 291 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06143 Vivi-Chr5 167062579 167065713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06143 59 286 Calmodulin-binding Proteins AT2G36910 23.554 2.00e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06143 K09013 - gmx:100811883 440.269