Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06141 ATGAGAGGAAAGGGACCGATTGTGCCGTTGTGTTACTCTCGCGGTGGAAAATTACAACGAATAGAGAAATTCGATGCTCCTTCTTCTTCTTCAAGATATGACATAGTAGTTGACGGAGACGGTAACAGAAAGCGTAAATGTGAATATCTTCAAGAACCTTTAACTACAGGTCACATTGTGAACAACGTGTTGCTGAATGATGGTCCTCTTCTTGGACGGGAATTTGATTCTCTTCCTACAGGACCCAAAAATTACACTCATGCTTGTCAACAGGACCACGAGTCTGTCAAAAGGAGGAAGGCTTCCAATAGTGCATTTCAAAATCACCCTAATTGTAATGTGAAAGCACCCGTGAAGAAACATGGTATGGGCAAAGGTCTGATGACAGTTTGGAGGGCGACAAATCATGATACCAGAGACCTTCCAGTCGGTTTTGATTTTTCTGACCGGGAAACACCGATATCAATCATCAGGTCTCAGGAAGCAGTAACTGTGAATGGAAAGCCAAGAAAAAAATTGCCTAATAGGAAACCTACATTTCAGGAGAAGAGGAAACATTTCGTGCAAACAAGAGAGGGGGAATCAAACCAGTATGTGACTCAGAACCAGCCACCCATAGAAAACTGTGAACTTGCTTTAGACAGCTCAATATTCGAGGAGGGAGTTGATCAAATTTCAATGTTAATTGATGATGAAGAGTTAGAGCAGAGAGAGTTGCAAGAAGGAACCAATCTGCTTGTTTGTTCAAATGAACTTGCTGCCTATGGAATGCCCGGTGGCTCACTTTGTCCAGATGTGCTAGTCAAGTTCCCCCCAGGTGCTGTCAAGATGAAGAAACCTATACATTTGCAACCTTGGGACTCATCTCCAGAACTGGTGAAGAAATTATTTAAGGTGTTCCATTTCATATATACATATGCCGTAGTTGTTGATGTTTGTCCCTTCACTCTTGATGAGTTTGTTCAGGCATTTCATGATAAGGACTCAATGTTACTTGGAAAGATTCACGTGGCCCTTCTCACACGGCTTCTATCTGACATTGACGTAGAGCTTTCTAATGGGTTTTGTCCTCATTTAAATAGGTCATGCAATTTTCTTGCGTTGCTTCACTCAGTTGAAAGTCAAGAATATTCCCTCAACGTTTGGAAAAGATCACTAAACCCTCTTACTTGGATTGAAATACTCCGCCAAGTGCTGGTAGCGGCTGGATTTGGTTCCAAGCAAGGTGCCTTACGAAGAGGAGTCCTTGGCAAGGACATGGACATTCTTGTACACTATGGCCTATGCCCTGGCACCTTGAAGTGTGAGTTGTTTAAAATCTTGTCAGAACAAGGTAAAAATGGATGCAAAATTTCCGAGCTGATGAAGTCAATGCAGATTGCGGAATTAAAACTTGGCAGCACAACGGAGGAACTAGAGTCTTTAATATATTCCACACTTTCAAGTGATATTACTTTATTTGAAAAAATTTCATCGTCTGCATATCGATTGCGTATGAGCACTGTTACAAAGGACACCGATGATTGCCAGTCAGATGCAGAGGACTCTGGGAGTGTTGATGACGAGCCTAATGAATCTGATGCATGTAGCAGTGGAGATGATTTTGAAATCGATCCAATAAACTCTAACAAAAGAAAAGTTAAGCGTGATGACATTCGTAAAGTTAAACATAATAGGCTGAAAGTTTACACTGAAATTGATGAGAGCCACGCAGGAGAAGTGTGGTTGTTAGGACTGATGGATAGTGAGTACTCAGATTTGAAAATTGAAGAAAAATTGAATGCATTGGCAGCGTTGACTGGTCTTCTTTCATCTGGATCCAGCATCAGGTTGAAGAATCCAGTAAATGTTAAAGCTGATTGTAGTTCAAGTATCCAGTTACGTGGTTCTGGAGCAAAAATTAAGAGATCAATAGTAAAGAAGCCCAGTTCATTATTGAACCCAATTGAACAAATACAATGTATTAAAACGGTGCACATGAGCTCTCACCCCGGTTCAGCAGATTCCTCATTGTTAGTCTCAAATTTCCATATTCAGGAAGCGTCCTTTGAGAAAAGAAAAGGTTCAGCTAATTCACACCCCATACAATCAGTATTTCTGGGATCTGATCGTAGATACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGCCGGTGATCCTGGACACAGGAGGGTTTACTTTGAATCCTCTGAAGATGGTCACTGGGAGGTGATTGATACAGAAGAGTCATTGTGTGCCTTGTTGTCACTTCTGGATGATAGAGGGAAACGCGAGGCTCTTCTTATTGAATCTTTGGAGAGACGACAAACATCTTTATGTAGATCTATGAGCAGGGTTAAAGTTAACAATATTGGAATGGGGTGTATGTCTCATTCTGATCAGTCTGAGCTGGATAGGGTTACAGAAGACAGCTGTTCTCCAGTATCTGATGTAGACAATCTGAATCTGACTGAGACTGCTGGAGATTCTTTGCCGTCACCTGGTGCTGTGGTAATTGAAGCTGGGAAGAGAGCAGAGGAACAATTGCAAAAATGGATTCGTGTCCAAGAGTTTGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAACGTTGTAAAATACGGAAAAAGGTCTTATCTTGACTCTCTCGCCAGATGTAGGAGTTGCCATGACCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGACCTTGAAGAAAAATATGCAATCCACGTAGCAATGTGCAGGGAGAAAGAAGACAGCAGTACTTTTCCAAATCATAAAGTCTTGTCATCACAGATTCAATCATTGAAAGCTGCAATTTATGCAATTGAGTCTGTTATGCCTGAAGACGCCCTGGTTGGTGCTTGGAGGAAGTCCGCTCATAATCTATGGATCAAAAGGCTTAGACGCACCTCAACTTTAGTGGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAATAAGGGCTGGTTATTTCAATGCAAATTTCCAGACGGTGTGGTTGAAGAAACTGTTACATCTTTTGCATCAATGCCCCATACTTCATCTGCTCTTGCTCTGTGGTTGGTGAAGTTAGATGCCATAATTGAACCTTACCTGGACAGAGTTCAAACTCAGAAAAAACAGGGAATTGGTAAGCGTGGTTCGTAG 3171 0.4144 MRGKGPIVPLCYSRGGKLQRIEKFDAPSSSSRYDIVVDGDGNRKRKCEYLQEPLTTGHIVNNVLLNDGPLLGREFDSLPTGPKNYTHACQQDHESVKRRKASNSAFQNHPNCNVKAPVKKHGMGKGLMTVWRATNHDTRDLPVGFDFSDRETPISIIRSQEAVTVNGKPRKKLPNRKPTFQEKRKHFVQTREGESNQYVTQNQPPIENCELALDSSIFEEGVDQISMLIDDEELEQRELQEGTNLLVCSNELAAYGMPGGSLCPDVLVKFPPGAVKMKKPIHLQPWDSSPELVKKLFKVFHFIYTYAVVVDVCPFTLDEFVQAFHDKDSMLLGKIHVALLTRLLSDIDVELSNGFCPHLNRSCNFLALLHSVESQEYSLNVWKRSLNPLTWIEILRQVLVAAGFGSKQGALRRGVLGKDMDILVHYGLCPGTLKCELFKILSEQGKNGCKISELMKSMQIAELKLGSTTEELESLIYSTLSSDITLFEKISSSAYRLRMSTVTKDTDDCQSDAEDSGSVDDEPNESDACSSGDDFEIDPINSNKRKVKRDDIRKVKHNRLKVYTEIDESHAGEVWLLGLMDSEYSDLKIEEKLNALAALTGLLSSGSSIRLKNPVNVKADCSSSIQLRGSGAKIKRSIVKKPSSLLNPIEQIQCIKTVHMSSHPGSADSSLLVSNFHIQEASFEKRKGSANSHPIQSVFLGSDRRYNRYWLFLGPCNAGDPGHRRVYFESSEDGHWEVIDTEESLCALLSLLDDRGKREALLIESLERRQTSLCRSMSRVKVNNIGMGCMSHSDQSELDRVTEDSCSPVSDVDNLNLTETAGDSLPSPGAVVIEAGKRAEEQLQKWIRVQEFDSWIWNSFYLDLNVVKYGKRSYLDSLARCRSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHVAMCREKEDSSTFPNHKVLSSQIQSLKAAIYAIESVMPEDALVGAWRKSAHNLWIKRLRRTSTLVELLQVLADFVGAINKGWLFQCKFPDGVVEETVTSFASMPHTSSALALWLVKLDAIIEPYLDRVQTQKKQGIGKRGS 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06141 1056 MobiDBLite consensus disorder prediction 506 536 - -
Vivi5g06141 1056 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 570 610 IPR028942 -
Vivi5g06141 1056 MobiDBLite consensus disorder prediction 512 532 - -
Vivi5g06141 1056 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 696 769 IPR028941 -
Vivi5g06141 1056 SMART testlast3 290 349 IPR018501 -
Vivi5g06141 1056 PANTHER HOMEOBOX PROTEIN SIX 181 1043 - -
Vivi5g06141 1056 Pfam DDT domain 291 346 IPR018501 -
Vivi5g06141 1056 ProSiteProfiles DDT domain profile. 290 349 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06141 Vivi-Chr5 167016918 167026197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06141 210 1036 Homeobox Transcription Factor Family AT1G28420 26.210 8.18e-75 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vivi5g06141 WSD 6.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06141 - - mtr:112417546 1623.99