Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06139 ATGACGACGCAGGAAGAAGCTGATTCATCCACGGTCGCCGCATCTCCAGAAGTTGTAGGAGGAGGAGGAGAGAACAACGGTATAAATACTGAGCTATGGCAAGCTTGTGCTGGACCTCTTGTCAATCTCCCTTCACCTGGAACTCATGTCGTTTACTTCCCTCAAGGTCACAGCGAACAAGTTGCAGCATCTTTGAAGAAAGATGTGGATGTTCAAGTACCAAACTATTCCAATCTCCCATCCAAACTACCGTGTATTCTTCATAGTCTCACCTTACATGCAGATCCTGATACAGATGAAGTCTATGCCCGGATGACGCTTCAGCCAGTGTCTTCGTTTGACATGGATGCCTTATTAAGATCAGATATGTCTCTCAAGTCGAGCAAGACACAACCTGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACGAGTACTCATGGAGGTTTCTCTGTTCCTCGCCGTGCTGCAGAGAAGATTTTCCCTCCTCTTGATTTCTCTGCGCAACCTCCTGCTCAAGAACTTGTGGCAAAGGATTTGCATGGTAATGTCTGGAAGTTCCGACATATATATCGTGGACAACCGAAACGTCACTTACTCACAACTGGATGGAGTCTATTTATCAGCGGAAAAAGGCTTTTAGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGTTGCTTTTGGGTATCCGACGAGCAAACAGACAACCGACCAACTTATCATCCTCAGTACTATCAAGTGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTAGTGCGAACAGTAGTCCATTCACCGTGTTTTATAATCCTAGGGCGAGTCCTTCAGAATTTGTTATTCCATTGGCCAAATACTACAGGGCAGTATACAGCCACCAAATTTCACCTGGTATGCGCTTTCGAATGATATTTGAAACAGAAGACTCGGCAACAAGAAGATATATGGGTACAGTTATAGGTGTCAGTGATCTGGATTCCGTGAGATGGAAAAACTCACAGTGGCGTAATTTACAGGTCGGCTGGGACGAATCTGGTGCTGGGGAAAGGCGGAGTAGGGTCTCAGTCTGGGAAATTGAGCCTGTTACTGCTCCATTTTTCCTTTGTCCTCCTCCTTTCTTCCGATCCAAGAGACCAAGACAACCCGGAATGCCTGATGATGAGCTGTTTGATGTCAGTAACCTTTTCAAGAGTACAATGCCTTGGCTTGGTGATGATATGATTATGAAGGATCCACAAGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGACCATACAGAAAAATCCTGCTCTGGCTAGCTCATTGCAATCAAATTACGGACCTTCTTTGTCTGGATCCGTTCTACACAATCTTCCCGGCACCGATATTGCTCATCAATTGGGACTTTCCACTCAACAAATCTCTCAGTCAAACAATGTAGCTCTCAATGCTCCAGTTCAGACTCCACCATCCACATCTAGTGGATTGCAAACAGTCACGCAGCCTGAGCAACTGTTGGGTAATATTACTCAACATTCTAGACAGAACATGGCAAATCAAACTCTACCACAAACTCAACTTCTTAATCCCCAGAGCGTTGTCCAAATGAACAATATTCTTCAATCACAACAACCATCCATTCAAAACCATGAACTCCATAGAAGTTTCTCTCAGAACCAACTGCAGCAGCTTCAACAGATGTGTCAGAACCAACAGCCAAATATGACTCAATCCACTATGCCAGATCACAATAATCAACAGTTGCATCTGTCTGATAATCAAGTTCGACTTCATTTGTTACAGAAGCTTCAACAGCAACAACAAACATTCTTGGCTCAGCAATCTGCATTGCAGCAGCCTGCTCAACTTGTTCAAAACCAAGACCAGCAGAGACGACTTTTAGATGATCTAACACAAACACACAACTCTAAGGCCATAACTCCCGGTCAATTGTTTGAAATTCCTCCTTTACTTCAAAACTCACTGCCCGAGGCTAATTCTATGATCCATCAGATGACAGATCATGGTAGCCAGAACAATGTTCAGTTCTCTCATCCATCTAAACAACCAAAGCTTCAACACCAACCACAGCAAACGCAACCCGGCTTTCTTTCTAAAACGTCCAGTCATGTTGGACTTCCTTCTGCTACTACAAATAATCAGTTATCTGCTTCTGGTTGTAGTATACGTACTGGAGCAACTGGAACTGCGCCATCTATCATTACTGATGATATTCCATCTTGCTCCACTTCACCTTCCACAAATAACTGTGCTAGTGTGCTTCCTCCAGTGACAACATCCCATAACCTTATGAACACAATAGGGAATGACATGGCTCAGTCTGCTGTGACAATCTTGAGTCAAAGTTCTAATGCAAATGAGGTCAAATATGTACTGCCAAATTATCAAGTTAAGCCTTGTTTAAACATTTCCGAAAATCACAACAAAGGAAATTTTTACCCTGAGACATGCTTGAATGGTGGTGCTGTCCAGACAGATTGTTTGGATACATCGTCTTCTACAACTTCAGTCTGCCTTTCTCAGAGCAATACACACTTTCATCAAAATGACAACCCGTTATCCTACAATCCACGGTCGATGTTCTGTAGAGACAGCATTCAAAATGTGGAAGTTCAGGCTGATGATAGGTGCAATGTTTCATATGGCAACAGCATGAATGGGCAAATAAGAATGCCACTGAATCTAGATTCTACTATAACCAAAGGCACAACAAGGTCATGCCAGGATTTGTCAACTAATTTCTCTTCCGAAGGCTTACTTGGGGATTATGAAAATAACGGCGATACTCAGCCAGAACTTTCATCTTCCATGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATTCCACCATAAATGATAGTAGTTTCTTGAATACTGGTCCATGGGCTCCACCGCCGCCGCCACATCAGTTTCAACGGATTAGGACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACAAGATATTCAGGCTACGAGGAACTTAAACATGACCTCGCTCGTAGGTTTGGTATTGAGGGACAGCTGGAAGATCGACAAAGGATAGGGTGGAAACTTGTTTATGTTGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAATTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACGGATGAGCATAGACGGAGATTTTGGCAATGGCATTAGCCTTCCAAAACAAGCCGGTAGCAGCTCGGATGGCGGGAATGCTTAA 3300 0.4339 MTTQEEADSSTVAASPEVVGGGGENNGINTELWQACAGPLVNLPSPGTHVVYFPQGHSEQVAASLKKDVDVQVPNYSNLPSKLPCILHSLTLHADPDTDEVYARMTLQPVSSFDMDALLRSDMSLKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANSSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMIFETEDSATRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDESGAGERRSRVSVWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDELFDVSNLFKSTMPWLGDDMIMKDPQAFPGMSLAQWMTIQKNPALASSLQSNYGPSLSGSVLHNLPGTDIAHQLGLSTQQISQSNNVALNAPVQTPPSTSSGLQTVTQPEQLLGNITQHSRQNMANQTLPQTQLLNPQSVVQMNNILQSQQPSIQNHELHRSFSQNQLQQLQQMCQNQQPNMTQSTMPDHNNQQLHLSDNQVRLHLLQKLQQQQQTFLAQQSALQQPAQLVQNQDQQRRLLDDLTQTHNSKAITPGQLFEIPPLLQNSLPEANSMIHQMTDHGSQNNVQFSHPSKQPKLQHQPQQTQPGFLSKTSSHVGLPSATTNNQLSASGCSIRTGATGTAPSIITDDIPSCSTSPSTNNCASVLPPVTTSHNLMNTIGNDMAQSAVTILSQSSNANEVKYVLPNYQVKPCLNISENHNKGNFYPETCLNGGAVQTDCLDTSSSTTSVCLSQSNTHFHQNDNPLSYNPRSMFCRDSIQNVEVQADDRCNVSYGNSMNGQIRMPLNLDSTITKGTTRSCQDLSTNFSSEGLLGDYENNGDTQPELSSSMVSQTFGVPDMTFNSIDSTINDSSFLNTGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQRMSIDGDFGNGISLPKQAGSSSDGGNA 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06139 1099 Gene3D - 133 236 IPR015300 -
Vivi5g06139 1099 SMART B3_2 135 237 IPR003340 GO:0003677
Vivi5g06139 1099 FunFam Auxin response factor 133 237 - -
Vivi5g06139 1099 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g06139 1099 FunFam Auxin response factor 299 370 - -
Vivi5g06139 1099 SUPERFAMILY CAD & PB1 domains 999 1064 - -
Vivi5g06139 1099 ProSiteProfiles PB1 domain profile. 986 1070 IPR000270 GO:0005515
Vivi5g06139 1099 CDD B3_DNA 134 226 IPR003340 GO:0003677
Vivi5g06139 1099 Gene3D - 981 1075 - -
Vivi5g06139 1099 SUPERFAMILY DNA-binding pseudobarrel domain 125 264 IPR015300 -
Vivi5g06139 1099 MobiDBLite consensus disorder prediction 675 716 - -
Vivi5g06139 1099 FunFam Auxin response factor 981 1075 - -
Vivi5g06139 1099 Coils Coil 546 566 - -
Vivi5g06139 1099 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 1075 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g06139 1099 Pfam Auxin response factor 261 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g06139 1099 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Vivi5g06139 1099 Pfam AUX/IAA family 987 1070 IPR033389 -
Vivi5g06139 1099 Gene3D - 299 370 - -
Vivi5g06139 1099 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06139 Vivi-Chr5 166984246 166989945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06139 23 478 B3 DNA Binding Superfamily AT1G19220 69.717 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g06139 B3 9.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06139 - - ccaj:109803454 1459.51