Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06138 ATGACGACGCAGGAAGAAGCTGATTCATCCACGGTCGCCGCATCTCCAGAAGGAGGAGGAGGAGAGAACAACGGTATAAATACTGAGCTATGGCAAGCTTGTGCTGGACCTCTTGTCAATCTCCCTTCACCTGGAACTCATGTCGTTTACTTCCCTCAAGGTCACAGCGAACAAGTTGCAGCATCTTTGAAGAAAGATGTGGATGTTCAAGTACCAAACTATTCCAATCTCCCATCCAAACTACCGTGTATTCTTCATAGTCTCACCTTACATGCAGATCCTGATACAGATGAAGTCTATGCCCGGATGACGCTTCAGCCAGTGTCTTCGTTTGACATGGATGCCTTATTAAGATCAGATATGTCTCTCAAGTCGAGCAAGACACAACCTGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACGAGTACTCATGGAGGTTTCTCTGTTCCTCGCCGTGCTGCAGAGAAGATTTTCCCTCCTCTTGATTTCTCTGCGCAACCTCCTGCTCAAGAACTTGTGGCAAAGGATTTGCATGGTAATGTCTGGAAGTTCCGACATATATATCGTGGACAACCGAAACGTCACTTACTCACAACTGGATGGAGTCTATTTATCAGCGGAAAAAGGCTTTTAGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGTTGCTTTTGGGTATCCGACGAGCAAACAGACAACCGACCAACTTATCATCCTCAGTACTATCAAGTGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTAGTGCGAACAGTAGTCCATTCACCGTGTTTTATAATCCTAGGGCGAGTCCTTCAGAATTTGTTATTCCATTGGCCAAATACTACAGGGCAGTATACAGCCACCAAATTTCACCTGGTATGCGCTTTCGAATGATATTTGAAACAGAAGACTCGGCAACAAGAAGATATATGGGTACAGTTATAGGTGTCAGTGATCTGGATTCCGTGAGATGGAAAAACTCACAGTGGCGTAATTTACAGGTCGGCTGGGACGAATCTGGTGCTGGGGAAAGGCGGAGTAGGGTCTCAGTCTGGGAAATTGAGCCTGTTACTGCTCCATTTTTCCTTTGTCCTCCTCCTTTCTTCCGATCCAAGAGACCAAGACAACCCGGAATGCCTGATGATGAGCTGTTTGATGTCAGTAACCTTTTCAAGAGTACAATGCCTTGGCTTGGTGATGATATGATTATGAAGGATCCACAAGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGACCATACAGAAAAATCCTGCTCTGGCTAGCTCATTGCAATCAAATTACGGACCTTCTTTGTCTGGATCCGTTCTACACAATCTTCCCGGCACCGATATTGCTCATCAATTGGGACTTTCCACTCAACAAATCTCTCAGTCAAACAATGTAGCTCTCAATGCTCCAGTTCAGACTCCACCATCCACATCTAGTGGATTGCAAACAGTCACGCAGCCTGAGCAACTGTTGGGTAATATTACTCAACATTCTAGACAGAACATGGCAAATCAAACTCTACCACAAACTCAACTTCTTAATCCCCAGAGCGTTGTCCAAATGAACAATATTCTTCAATCACAACAACCATCCATTCAAAACCATGAACTCCATAGAAGTTTCTCTCAGAACCAACTGCAGCAGCTTCAACAGATGTGTCAGAACCAACAGCCAAATATGACTCAATCCACTATGCCAGATCACAATAATCAACAGTTGCATCTGTCTGATAATCAAGTTCGACTTCATTTGTTACAGAAGCTTCAACAGCAACAACAAACATTCTTGGCTCAGCAATCTGCATTGCAGCAGCCTGCTCAACTTGTTCAAAACCAAGACCAGCAGAGACGACTTTTAGATGATCTAACACAAACACACAACTCTAAGGCCATAACTCCCGGTCAATTGTTTGAAATTCCTCCTTTACTTCAAAACTCACTGCCCGAGGCTAATTCTATGATCCATCAGATGACAGATCATGGTAGCCAGAACAATGTTCAGTTCTCTCATCCATCTAAACAACCAAAGCTTCAACACCAACCACAGCAAACGCAACCCGGCTTTCTTTCTAAAACGTCCAGTCATGTTGGACTTCCTTCTGCTACTACAAATAATCAGTTATCTGCTTCTGGTTGTAGTATACGTACTGGAGCAACTGGAACTGCGCCATCTATCATTACTGATGATATTCCATCTTGCTCCACTTCACCTTCCACAAATAACTGTGCTAGTGTGCTTCCTCCAGTGACAACATCCCATAACCTTATGAACACAATAGGGAATGACATGGCTCAGTCTGCTGTGACAATCTTGAGTCAAAGTTCTAATGCAAATGAGGTCAAATATGTACTGCCAAATTATCAAGTTAAGCCTTGTTTAAACATTTCCGAAAATCACAACAAAGGAAATTTTTACCCTGAGACATGCTTGAATGGTGGTGCTGTCCAGACAGATTGTTTGGATACATCGTCTTCTACAACTTCAGTCTGCCTTTCTCAGAGCAATACACACTTTCATCAAAATGACAACCCGTTATCCTACAATCCACGGTCGATGTTCTGTAGAGACAGCATTCAAAATGTGGAAGTTCAGGCTGATGATAGGTGCAATGTTTCATATGGCAACAGCATGAATGGGCAAATAAGAATGCCACTGAATCTAGATTCTACTATAACCAAAGGCACAACAAGGTCATGCCAGGATTTGTCAACTAATTTCTCTTCCGAAGGCTTACTTGGGGATTATGAAAATAACGGCGATACTCAGCCAGAACTTTCATCTTCCATGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATTCCACCATAAATGATAGTAGTTTCTTGAATACTGGTCCATGGGCTCCACCGCCGCCGCCACATCAGTTTCAACGGATTAGGACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACAAGATATTCAGGCTACGAGGAACTTAAACATGACCTCGCTCGTAGGTTTGGTATTGAGGGACAGCTGGAAGATCGACAAAGGATAGGGTGGAAACTTGTTTATGTTGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAATTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACGGATGAGCATAGACGGAGATTTTGGCAATGGCATTAGCCTTCCAAAACAAGCCGGTAGCAGCTCGGATGGCGGGAATGCTTAA 3294 0.4341 MTTQEEADSSTVAASPEGGGGENNGINTELWQACAGPLVNLPSPGTHVVYFPQGHSEQVAASLKKDVDVQVPNYSNLPSKLPCILHSLTLHADPDTDEVYARMTLQPVSSFDMDALLRSDMSLKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANSSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMIFETEDSATRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDESGAGERRSRVSVWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDELFDVSNLFKSTMPWLGDDMIMKDPQAFPGMSLAQWMTIQKNPALASSLQSNYGPSLSGSVLHNLPGTDIAHQLGLSTQQISQSNNVALNAPVQTPPSTSSGLQTVTQPEQLLGNITQHSRQNMANQTLPQTQLLNPQSVVQMNNILQSQQPSIQNHELHRSFSQNQLQQLQQMCQNQQPNMTQSTMPDHNNQQLHLSDNQVRLHLLQKLQQQQQTFLAQQSALQQPAQLVQNQDQQRRLLDDLTQTHNSKAITPGQLFEIPPLLQNSLPEANSMIHQMTDHGSQNNVQFSHPSKQPKLQHQPQQTQPGFLSKTSSHVGLPSATTNNQLSASGCSIRTGATGTAPSIITDDIPSCSTSPSTNNCASVLPPVTTSHNLMNTIGNDMAQSAVTILSQSSNANEVKYVLPNYQVKPCLNISENHNKGNFYPETCLNGGAVQTDCLDTSSSTTSVCLSQSNTHFHQNDNPLSYNPRSMFCRDSIQNVEVQADDRCNVSYGNSMNGQIRMPLNLDSTITKGTTRSCQDLSTNFSSEGLLGDYENNGDTQPELSSSMVSQTFGVPDMTFNSIDSTINDSSFLNTGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQRMSIDGDFGNGISLPKQAGSSSDGGNA 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06138 1097 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 1073 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g06138 1097 FunFam Auxin response factor 297 368 - -
Vivi5g06138 1097 MobiDBLite consensus disorder prediction 673 714 - -
Vivi5g06138 1097 Coils Coil 544 564 - -
Vivi5g06138 1097 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g06138 1097 MobiDBLite consensus disorder prediction 1 27 - -
Vivi5g06138 1097 SUPERFAMILY CAD & PB1 domains 997 1062 - -
Vivi5g06138 1097 SMART B3_2 133 235 IPR003340 GO:0003677
Vivi5g06138 1097 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Vivi5g06138 1097 FunFam Auxin response factor 131 235 - -
Vivi5g06138 1097 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Vivi5g06138 1097 Gene3D - 131 234 IPR015300 -
Vivi5g06138 1097 Gene3D - 979 1073 - -
Vivi5g06138 1097 CDD B3_DNA 132 224 IPR003340 GO:0003677
Vivi5g06138 1097 Gene3D - 297 368 - -
Vivi5g06138 1097 ProSiteProfiles PB1 domain profile. 984 1068 IPR000270 GO:0005515
Vivi5g06138 1097 Pfam AUX/IAA family 985 1068 IPR033389 -
Vivi5g06138 1097 FunFam Auxin response factor 979 1073 - -
Vivi5g06138 1097 SUPERFAMILY DNA-binding pseudobarrel domain 123 262 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06138 Vivi-Chr5 166984246 166989945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06138 16 476 B3 DNA Binding Superfamily AT1G19220 69.181 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g06138 B3 9.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06138 - - ccaj:109803454 1459.51