LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g06134	ATGTCAAGAATCATTCAAGAGAAGAAGCTAGGTGCAGGACGTGTTGTTGCAGTAGCAATTGAAAACAACAAAACAAGCCAATATGCTGCTAAATGGGCTGTTGATAATCTTCTTCCTAAAGATCAACATCTTTTGTTACTTCATGTTAGACAAAGAGCTTCTTCAATTCCTACACCAAATGGAAACCTTATAGCTGTTGATGTCAATGATGATGTAGCTAGAGCTTACATGCAACAAATGGATAATGAATCGAAAGAGCTTTTCGCTTCGTTTCGTGTCTTCTGCAATAGAAAGAATATAACGTGCAAAGAAATCTTGTTGGAAGACTTGGATATAACTAAGGGTATCATAGAAGGTGTTACAACATATTCCATTGAGCTTCTTGTTCTTGGATCACCATCAAGGAGTGGTCTTGTAAGAAGATTTAGGACAACTGATGTTCCTAGCCTCGTGTCGAAAGGAGCGCCTCCGTTTTGCACGGTGTACATTATTTCCAAAGGAAAGATCTCATCTGTGAAAACTGCTACTATGCCTTTACCTGCGAAGGCCGTAATGCGTAGTAATGCTATACAGGCGCCACAACAGCTGCAACAAAGTCCTGATAAATTCTATGTACAACAATCAATGCAAAACCACCCGCCACGACCAACAGGAGAGAAGTCATCGTTACTTTCACGCCTTCAAGACGAAGAAGATGAAATCAGATCGCCATTCACGAGAGGCGCAAGACCAAATCACAAACCGTACGAGTCTACTGTCACTGACTCCGATATCTCCTTCGTGAGTAGCGGAAGGCCAAGTATCGATAGGATGTTCCCTTCATTGTATGAAGAAATGGACTCTGGAAGTGGAATTACCCCTCGGCTTTCAGGAGGCTCGGATTATGATATCAGAAGCTTCGGTTCGTCTTTCTCAGGTGCTAAGTCAATTGAACATGACTATTCATTCTGTTCACAAGACAGTGGAATGTCCATGTCACCGCAACAAAAGATATCAAGCTCGGATGAAGTAGAAGCTGAAATGAGGAGATTGAGGTTAGAGCTGAAGCAAACAATGGAAATGTATAGTACAGCGTGCAAGGAAGCATTGACAGCAAAACAAAAGGCAATTGAACTTCAGCGATGGAAATCTGACGAACAAAAGAAAAGCAGTGATGCAAAATTATCTGAAGAATCAGCATTCGCGGTAGCTGAGAAAGAGAGAGCGAAAAGTAAAGTTGCTATAGAGGCAGCAGAAGCAAGTAGAAAAATCGCAGAGTTGGAAGCACAGAAAAGAATGAGTGCAGAAATGAAATCTAACTCAGGAGGAGACAGTTTCTTACACGGTCCGGCTAGGTACCGAAGATACAGTATTGAGGAAATAGAAGAAGCAACAAAATACTTTTCCAACTCGCTCAAAATCGGTGAAGGAGGATATGGACCAGTCTATAGAGCTGAACTAGATCACACTGCAGTTGCAATAAAAGTGTTGAAACCTGATGCAGCTCAAGGACGGTCGCAGTTTAACCAAGAGATTGAAGTTCTAAGTAGCATAAGACATCCAAACATGGTTCTCCTGCTCGGAGCATGTCCGGAGTTCGGTTGCCTAGTGTACGAGCACATGAGTAATGGAAGCTTGGATGATTGTCTCTTTAGGAGAAATAATAGTAAAGCACCAGTTCTACCATGGCAGCTAAGATTCCGAATTGCTGCGGAGATTGCCACTGGGCTGCTTTTCCTTCACCAGACGAAACCAGAACCATTGGTGCACCGTGATTTAAAACCCGGAAATATTTTGCTCGACCGGAATTATGTGAGCAAGATTAGTGATGTAGGGTTGGCAAGGCTTGTCCCTCCTTCGGTTGCAGACACGGTGACACAGTATCGAATGACCACAACTGCTGGAACTTTCTGTTACATTGATCCTGAGTATCAGCAAACGGGCATGCTCGGAACAAAGTCTGATATTTACTCGCTTGGTATCATGCTTCTACAGATTATAACAGCAAAGCCACCAATGGGTTTGAGTCACCATGTTGGAAGATCTATTGAGAGAGGTACTTTTGGTGAGATGCTCGATCCTGCTGTTGAAGATTGGCCAATTGAACATGCTATGCATTTTGCCAAGCTTGCTCTTCAGTGTGCTGAAATGAGAAGGAAAGATAGACCTGATCTTGGGAAAGTTATTTTGCCAGAGCTGAACAAACTCAGAGATTTTGCTGATGAGAACATGCCTATGATGATGATGTTTGGTGGTGGTAGCGGTGGAGGATTCAATCAACGAAATAATATGTATTCGCGATCCTCGTTGTCCTCCTCATCAAGTCAAGACTCGATGAGTGATTCACAGTCAATGTCTGGAATGTCTGGATATGAGAGTCGTTCAAGTTCGTCTTCAGTGGGAAAAATGTAA	2391	0.4274	MSRIIQEKKLGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQHLLLLHVRQRASSIPTPNGNLIAVDVNDDVARAYMQQMDNESKELFASFRVFCNRKNITCKEILLEDLDITKGIIEGVTTYSIELLVLGSPSRSGLVRRFRTTDVPSLVSKGAPPFCTVYIISKGKISSVKTATMPLPAKAVMRSNAIQAPQQLQQSPDKFYVQQSMQNHPPRPTGEKSSLLSRLQDEEDEIRSPFTRGARPNHKPYESTVTDSDISFVSSGRPSIDRMFPSLYEEMDSGSGITPRLSGGSDYDIRSFGSSFSGAKSIEHDYSFCSQDSGMSMSPQQKISSSDEVEAEMRRLRLELKQTMEMYSTACKEALTAKQKAIELQRWKSDEQKKSSDAKLSEESAFAVAEKERAKSKVAIEAAEASRKIAELEAQKRMSAEMKSNSGGDSFLHGPARYRRYSIEEIEEATKYFSNSLKIGEGGYGPVYRAELDHTAVAIKVLKPDAAQGRSQFNQEIEVLSSIRHPNMVLLLGACPEFGCLVYEHMSNGSLDDCLFRRNNSKAPVLPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTTTAGTFCYIDPEYQQTGMLGTKSDIYSLGIMLLQIITAKPPMGLSHHVGRSIERGTFGEMLDPAVEDWPIEHAMHFAKLALQCAEMRRKDRPDLGKVILPELNKLRDFADENMPMMMMFGGGSGGGFNQRNNMYSRSSLSSSSSQDSMSDSQSMSGMSGYESRSSSSSVGKM	796

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g06134	796	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	438	533	-	-
	Vivi5g06134	796	SUPERFAMILY	Protein kinase-like (PK-like)	440	721	IPR011009	-
	Vivi5g06134	796	Gene3D	HUPs	14	164	IPR014729	-
	Vivi5g06134	796	CDD	STK_N	15	167	-	-
	Vivi5g06134	796	Gene3D	Phosphorylase Kinase; domain 1	442	533	-	-
	Vivi5g06134	796	MobiDBLite	consensus disorder prediction	754	796	-	-
	Vivi5g06134	796	Gene3D	Transferase(Phosphotransferase) domain 1	534	740	-	-
	Vivi5g06134	796	MobiDBLite	consensus disorder prediction	237	260	-	-
	Vivi5g06134	796	PANTHER	OS02G0152300 PROTEIN	15	777	-	-
	Vivi5g06134	796	ProSiteProfiles	Protein kinase domain profile.	461	726	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g06134	796	Pfam	Protein kinase domain	464	716	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g06134	796	SMART	serkin_6	461	733	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g06134	796	Coils	Coil	403	430	-	-
	Vivi5g06134	796	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	16	147	-	-
	Vivi5g06134	796	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	581	593	IPR008271	GO:0004672\|GO:0006468
	Vivi5g06134	796	Coils	Coil	334	354	-	-
	Vivi5g06134	796	FunFam	U-box domain-containing protein 51	534	736	-	-
	Vivi5g06134	796	Pfam	Universal stress protein family	14	142	IPR006016	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g06134	Vivi-Chr5	166911363	166915297	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g06134	7	752	Receptor kinase-like Gene Family	AT1G78940	54.653	0.0	754

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vivi5g06134		Pkinase	4.8e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g06134	-		-	mtr:11428996	1222.99