Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06132 ATGGCAGAACTAATCACTGCTATTCCAAACAGAACCATATTCATCACATTGGTTTTCTTGTCATGTGTTGTTTCATCTTCTTATGCTGCTTCTGACTCTGACTTGCTCCTCAAGGTAAAGGACGATCTAGAGAAAGATCCAAATATATTGACATCATGGAACACAACGACATCTCCTTGTAACGGCGATAACTCCAATTGGCGCGGCGTTCGTTGTTACCAAGGAAAAGTTTGGGGACTGAAACTTGAGAATATGGGGTTAAAAGGGTTCATTGATGTCGATTCTCTTAAGGAGTTACCATATCTTAGAACTATTAGTTTCATGAATAATGAATTTGATGGTGCTTGGCCTGAGATTAACAAACTCACCGGTCTTAAATCGATTTTTCTTTCGAATAACAAATTTTCGGGAGATATTCCTGCTGATGCCTTTGTAGGTATGCAGTGGTTGAAGAAAATTCATCTGTCAAATAATCAGTTTACAGGTCCTATTCCACCTTCTATTGTTATGTTGCCAAAGCTTATGGAATTGAGATTGGATGGAAACAAATTCATCGGTCCTCTTCCTCATCTTAAGCAATCCAGATTGAAATCATTCAATGTAGCTAATAATCAGTTGCAAGGTCCAATCCCAATCACACTTAGTAAAATCCATGCTTCTTCCTTCGCAGGGAATGAAGAATTGTGCGGAGCACCATTAGCTGCATGTCCTTCAAAGAAGCCATCATTCGCAAGTATATGTATGGTGGCTGTGGTTGTTTGCGTTGCGTTGATTGTGATTGGAGTCACGGTGTTTTTCATCCTTCATCGGCGAAGAAACCGCGAGCAATCATCAATTCTCGAGAATCCGCCTTCAGGCCACCATAACAACAAAATAGGACGTAAAGATCCTGGTAGCGACAGTATAAGATCAACAAGATCGACGGGTTCGACCCATAGTAAAAAAGGCGATCAGATGAAGTTGTCGTTTATAAGAGACGACAGAGAGAGGTTTGATTTGCAAGAGTTGTTGAGAGCTTCTGCTGAGATTTTGGGAAGTGGTTGTTATAGTTCTTCTTATAAAGCTTCATTGGTGAATGGACCAAAAATAGTGGTGAAGAGGTTTAAACAAATGAATAATGTAGGGAAGGAAGAGTTTCAAGAGCACATGAGAAGGATTGGAAGGCTCAATAGTCCTAACTTGATTCCTCTTGTTGCTTACTATTATAGAAAAGAAGAGAAGCTTTTGGTTACTGATTTTGTTCAAAATGGAAGTCTAGCGGTTCGCCTTCACGGACATCAAGCTCTAGGAGAACCAAGCCTTGATTGGCCAACAAGGTTGAAAATAGTGAAAGGAATAGCAAGAGGTCTTGAGCATCTCTACAAAGACATGCCAAGCCTAATTGCACCTCATGGAAATCTCAAATCCTCAAATGTCCTTCTATCCGAAACATTCGAACCACTCCTCACAGACTATGGACTAGTACCAGTCACAAACCAAGAAATGGCCAAAGACATAATGGTAATATACAAATCACCAGAATATCTACAACATGGTAGAATCACAAAGAAAAGTGATGTTTGGTCTCTTGGAATATTAATACTAGAGATACTAACTGGTAAATTTCCAGCTACATTTTTACAACAAGGTAAAGGAAGTGAGGTGAGTTTAGCAAATTGGGTGTATTCAGTAGTGCCTGAGGAATGGAATAGTTCAGTGTTTGATAAAGAAATGAGTGACACAGAGAATGGTGAGGGTGAGATGGATAAGCTTTTGAGAATTGCATTGACTTGTTGTGAAGAAGATATTGAGAAAAGATGTGATTTGAAAGAAGTTGTTGAGAAAATTCTACAAGTGAATGAGAGAGATGTTGTTGATGATATAATAGACATGAAATGA 1878 0.3908 MAELITAIPNRTIFITLVFLSCVVSSSYAASDSDLLLKVKDDLEKDPNILTSWNTTTSPCNGDNSNWRGVRCYQGKVWGLKLENMGLKGFIDVDSLKELPYLRTISFMNNEFDGAWPEINKLTGLKSIFLSNNKFSGDIPADAFVGMQWLKKIHLSNNQFTGPIPPSIVMLPKLMELRLDGNKFIGPLPHLKQSRLKSFNVANNQLQGPIPITLSKIHASSFAGNEELCGAPLAACPSKKPSFASICMVAVVVCVALIVIGVTVFFILHRRRNREQSSILENPPSGHHNNKIGRKDPGSDSIRSTRSTGSTHSKKGDQMKLSFIRDDRERFDLQELLRASAEILGSGCYSSSYKASLVNGPKIVVKRFKQMNNVGKEEFQEHMRRIGRLNSPNLIPLVAYYYRKEEKLLVTDFVQNGSLAVRLHGHQALGEPSLDWPTRLKIVKGIARGLEHLYKDMPSLIAPHGNLKSSNVLLSETFEPLLTDYGLVPVTNQEMAKDIMVIYKSPEYLQHGRITKKSDVWSLGILILEILTGKFPATFLQQGKGSEVSLANWVYSVVPEEWNSSVFDKEMSDTENGEGEMDKLLRIALTCCEEDIEKRCDLKEVVEKILQVNERDVVDDIIDMK 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06132 625 FunFam pollen receptor-like kinase 1 307 413 - -
Vivi5g06132 625 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Vivi5g06132 625 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 614 IPR046959 -
Vivi5g06132 625 Gene3D Transferase(Phosphotransferase) domain 1 414 622 - -
Vivi5g06132 625 SUPERFAMILY Protein kinase-like (PK-like) 342 610 IPR011009 -
Vivi5g06132 625 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Vivi5g06132 625 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 93 188 - -
Vivi5g06132 625 SUPERFAMILY L domain-like 30 233 - -
Vivi5g06132 625 ProSiteProfiles Protein kinase domain profile. 338 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06132 625 FunFam Pollen receptor-like kinase 1 414 623 - -
Vivi5g06132 625 MobiDBLite consensus disorder prediction 278 319 - -
Vivi5g06132 625 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Vivi5g06132 625 MobiDBLite consensus disorder prediction 302 317 - -
Vivi5g06132 625 Pfam Protein tyrosine and serine/threonine kinase 342 609 IPR001245 GO:0004672|GO:0006468
Vivi5g06132 625 Gene3D Phosphorylase Kinase; domain 1 303 413 - -
Vivi5g06132 625 Gene3D Ribonuclease Inhibitor 194 236 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06132 Vivi-Chr5 166898353 166901016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06132 12 620 Receptor kinase-like Gene Family AT5G35390 50.943 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi5g06132 PK_Tyr_Ser-Thr 1.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06132 - - gmx:100804368 857.055