Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06126 ATGTGTGTAAACGCGGTTTCTGTTAGATCCAGATTCATGGGGATTTGCTTCAGCATTGAAGAAAAACACGTTTCCCATTCCGATTCTAAACCTAAACCTAATTCCATTTCCACTGATTCGGTTGGAAATGTATCCGCTGCACGAACGACTCCATTAGGTACTGGTTCGATGAATATCAAAGAACTTCGAGAAGGTGCTGGATACAGCAACGTGCTTATTTTTACCTATAACGAATTGAGGCTTGCGACGAAGCAGTTTCGGCCTGATTTTATACTTGGAGAAGGTGGATTTGGTGTTGTGTATAAAGGTGTTATTGATGATAGTGTAAGAGCGGGTTATAAATCCACTGAAGTCGCTATTAAGGAACTTAATCGCGAAGGGTTTCAAGGCGATAGGGAATGGCTTGCTGAGGTTAATTATTTGGGTCAATTCAGTCACCCGAATCTTGTGAAGCTCTTTGGATTCTGCTGTGAGGATGAACACCGCTTGTTGGTCTATGAATACATGGCTAGTGGGAGCTTGGAGAAACATCTTTTTCGTAGAGCCGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTGCATGCTGCAAGAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCCATCATATATCGTGACTTTAAGACTTCAAATATCTTACTAGACGCGGATTTCAATGCAAAGCTTTCAGACTTTGGCCTTGCGAAGGATGGACCGATGGGGGACCAAACACATGTTTCAACACGAGTGATGGGCACATATGGATATGCTGCTCCGGAGTATGTCATGACTGGGCATTTGACTGCTCGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAATTGCTTATTGGCAGGAGAGCACTAGATAAGAGCAGGCCTAGCCGAGAGCACAACTTGGTTGAGTGGGCACGACCGCTATTGAATCATAACAAAAAACTTCTGAAAATTTTAGACCCGAAAATAGAAGGGCAATATTCAAGTAAAACAGCAACAAAGGCAGCCCAATTAGCATATCAATGTCTTAGCCAAAACCCGAAAGGCAGACCTCTAATGAGCCAGGTGGTTGAAATCCTTGAAAGCTTTCAGTCAAGTGGGGGAAATGAGGAAGATCAAATCCTTCAAAGTGGTGGTAGCAGTATAACTCTTTATGAGGTTCCAAAGAGCAGCAAAGATACTCCAACTTAG 1200 0.4325 MCVNAVSVRSRFMGICFSIEEKHVSHSDSKPKPNSISTDSVGNVSAARTTPLGTGSMNIKELREGAGYSNVLIFTYNELRLATKQFRPDFILGEGGFGVVYKGVIDDSVRAGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLFGFCCEDEHRLLVYEYMASGSLEKHLFRRAGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKIEGQYSSKTATKAAQLAYQCLSQNPKGRPLMSQVVEILESFQSSGGNEEDQILQSGGSSITLYEVPKSSKDTPT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06126 399 SUPERFAMILY Protein kinase-like (PK-like) 68 364 IPR011009 -
Vivi5g06126 399 MobiDBLite consensus disorder prediction 30 49 - -
Vivi5g06126 399 ProSitePatterns Protein kinases ATP-binding region signature. 92 121 IPR017441 GO:0005524
Vivi5g06126 399 PANTHER OS01G0588500 PROTEIN-RELATED 39 367 - -
Vivi5g06126 399 FunFam Probable serine/threonine-protein kinase PBL8 169 380 - -
Vivi5g06126 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vivi5g06126 399 MobiDBLite consensus disorder prediction 25 49 - -
Vivi5g06126 399 Pfam Protein tyrosine and serine/threonine kinase 92 363 IPR001245 GO:0004672|GO:0006468
Vivi5g06126 399 Gene3D Transferase(Phosphotransferase) domain 1 169 383 - -
Vivi5g06126 399 CDD STKc_IRAK 92 364 - -
Vivi5g06126 399 FunFam Serine/threonine-protein kinase BIK1 54 168 - -
Vivi5g06126 399 Gene3D Phosphorylase Kinase; domain 1 62 168 - -
Vivi5g06126 399 ProSiteProfiles Protein kinase domain profile. 86 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06126 Vivi-Chr5 166855508 166859043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06126 74 363 Glycoside Hydrolase AT3G07070 51.536 3.02e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi5g06126 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06126 - - gmx:100800465 664.07