Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06121 ATGTTGGAAGATGGTGCTAAGTTCCCGATTGATCTGAACAAAAATAATAACTTTTATGATTTTTCCCAAGGCTTTTATCACAAGCTTGGTGAGGGTACGAATATGTCGATTGACAGTGTTGGGAGTTTGCAGACAAGTAATGGAGGTGGATCGGTTGCAATGTCGGTTGATAACAGCAGTGTTGGGTCGAATGATTCCAATACCCGGATGTTGGATCATCAAGGGTTGAAGAGGCGTGCGAATGATAACTACTCTGTTGCTCACAGTGCAAATCGTCGGGGAAGAGTCACACATGCGTTGAGCGACGATGCTTTAGCTCACGCTCTGATGGACAACAGTTCTCCGACTGAGGGACTTGAGAATTTCGAAGAGTGGACGATTGATTTGAGGAAGCTTAATATGGGCGAGGCTTTTGCTCAAGGAGCTTTCGGGAAACTCTACCGAGGTACTTACATTGGGGAGGATGTCGCTATCAAGATCTTGGAGAGGCCTGAAAATGATACGTCGAAGGCTTTGCTGATGGAGCAACAATTTCAGCAGGAGGTCATGATGTTGGCTACACTGAAGCATCCCAATATTGTTCGCTTCATCGGTGCATGCCGTAAGCCTATGGTGTGGTGCATTGTAACTGAGTATGCTAAGGGTGGATCGCTCCGACAGTTCTTAATGAAGCGCCAAAACCGATCAGTTCCCCTCAAACTGGCTATCAAACAAGCTTTGGATGTTGCAAGAGGCATGTCGTATGTTCATGGTCTGGGATTGATCCACAGGGACTTGAAGTCTGACAACCTGTTGATTTTTGGCGACAAGTCAATCAAAATTGCTGACTTTGGAGTTGCCCGGATTGAGGTGCAAACTGAAGGAATGACTCCCGAAACTGGGACCTACCGCTGGATGGCTCCGGAAATGATCCAACATAGGCCATACACACAGAAGGTGGATGTATATAGCTTCGGGATTGTCCTGTGGGAGCTCATCACTGGTATGCTTCCGTTTCAGAACATGACAGCAGTACAGGCAGCATTTGCGGTTGTCCACCGAAACGTCCGCCCTCTCCTGCCCCATGATTGTTTGCCTGTTCTCCGGGAGATCATGACAAGGTGCTGGGATCCAAACCCTGATGTGAGGCCACCGTTTCCTGAGATTGTAGCAATGCTTGAAAATGCAGAGATCGAGGTCATGACAACCGTCCGGAAGGCGAGGTTCAGGTGTTGCATAACTCAGCCGATGACCGCGGAGTGA 1242 0.4823 MLEDGAKFPIDLNKNNNFYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSVDNSSVGSNDSNTRMLDHQGLKRRANDNYSVAHSANRRGRVTHALSDDALAHALMDNSSPTEGLENFEEWTIDLRKLNMGEAFAQGAFGKLYRGTYIGEDVAIKILERPENDTSKALLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSLRQFLMKRQNRSVPLKLAIKQALDVARGMSYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVHRNVRPLLPHDCLPVLREIMTRCWDPNPDVRPPFPEIVAMLENAEIEVMTTVRKARFRCCITQPMTAE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06121 413 CDD STKc_MAP3K-like 139 386 - -
Vivi5g06121 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672|GO:0006468
Vivi5g06121 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672|GO:0006468
Vivi5g06121 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672|GO:0006468
Vivi5g06121 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672|GO:0006468
Vivi5g06121 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672|GO:0006468
Vivi5g06121 413 Gene3D Transferase(Phosphotransferase) domain 1 215 408 - -
Vivi5g06121 413 SMART serkin_6 132 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06121 413 SUPERFAMILY Protein kinase-like (PK-like) 115 386 IPR011009 -
Vivi5g06121 413 Gene3D Phosphorylase Kinase; domain 1 120 214 - -
Vivi5g06121 413 ProSiteProfiles Protein kinase domain profile. 132 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06121 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Vivi5g06121 413 PANTHER SERINE-THREONINE PROTEIN KINASE 48 387 - -
Vivi5g06121 413 FunFam serine/threonine-protein kinase HT1 215 408 - -
Vivi5g06121 413 FunFam Serine/threonine-protein kinase isoform 1 122 214 - -
Vivi5g06121 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06121 Vivi-Chr5 166766810 166770107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06121 21 413 MAP Kinase Kinase Kinase AT2G24360 77.608 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi5g06121 PK_Tyr_Ser-Thr 6.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06121 - - gmx:100788536 761.911