Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06108 ATGGCCAATATTTTTTCATATTTATCACTCTCACTAACACTTCTCTTTACTCTTACACTTACCATTACAGTAACAGAATCATCAAAATTCATGGACGACGACGTGAAATCTTCCATTCCTCTAGTATCATTTCTCGAACGTCTTCAACAAACTGCATTTGATACATTCAACGATCCTAAATTCGACCCTAAAACCTATGTCGATTTACCTCTTAAATTTCCTCTTTCTGTAACTGACGCCGCCTTCCAGAATCTTCCGAAAACCTCCACCGGTGCTGTTTCTGTTAACGATTTAAAGGTTTTTATTGGTAAGTATTTTGAAGGTGCAGGGGATGATTTGGCGTTATTTCATCCAGAGGATTTTGTTCCCGAGCCGGAGGGCTTTTTGCCCAAAGTGAAGAACCGTGAGGTGAGAGATTGGGCGGTTAAGGTTCATTCTCTTTGGAAAAACTTGAGTAGGAAGGTATCTGGCAAGGTGAAGGCTCACCCTAGTTACCATACTCTTCTTCCTGTTCCTGGTAATGTTGTTATTCCTGGTTCGCGGTTTCGGGAGGTTTATTATTGGGATTCTTACTGGGTGATTAGAGGGTTGTTGGTGAGTAAAATGTATAAGACTGCTAAATCTATTGTCATCAATCTCATTTCCTTCATTGATGAGTATGGGTTTGTTCTTAATGGTGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCTCTCTTAAGCGCTATGATTTATGAGATATACAAAGGCACCGGTGATGTAGAATTAGTTAAAAGATCTCTACCTGCACTACTCAAAGAATATGAGTTTTGGAATTCAGATATACATAAAGTGACCGTATCGGATGCTCAAGGTTGCACTCACACCTTAAATCGCTATAACGCAAGGTGGAACAAACCCAGGCCCGAATCGTCCACAATGGACAAAGCATCTGCTTCCAATTTTACGACTGTTTCAGAAAAACAACATTTTTACCGTCAACTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGACACCCTCCTAACTTCACGACATTGTCTACAACATCAGTGATACCTGTTGATTTAAATGCATTTATACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAATGTTACCGGAGATAATAGCACTGCCAAACATTTCCGGCAAATTTCAGATGTTAGAAAGGAGGCAATAAACTCTATTTTCTGGAATGCAAACAAGAAACAGTGGTTTGATTGCTGGCTCAGCAATGCCTCATCTGAGAAGGTGCATGTTTGGGATACTCTTCACCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTCTGTGGATGAAGCCATTTTACTCAGATGCTACACTTGTGACTAATGTTCTCGAAAGTCTCAAAACATCTGGCCTTCTTCATGCTGCTGGAGTTGCGACTTCTTTGACTAATTCAGGACAGCAGTGGGACTTTCCGAATGGTTGGGCTCCACTTCAACACATGTTAGTTGAAGGCCTTATTAAATCAGGGTTGAAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAGATGGATCACAACGAATTATATCGTTTACAAAAAAACAGGTGTAATGCACGAAAAGTTTGACGTTGAGAAATGCGGAGAATTCGGAGGTGGTGGTGAATACGTACCTCAGACTGGTTTTGGCTGGTCGAATGGAGTTGTGTTGGCATTCTTGGAAGAGTTTGGATGGCCTGAAGATCGTAAAATAGAATGCTGA 1755 0.4097 MANIFSYLSLSLTLLFTLTLTITVTESSKFMDDDVKSSIPLVSFLERLQQTAFDTFNDPKFDPKTYVDLPLKFPLSVTDAAFQNLPKTSTGAVSVNDLKVFIGKYFEGAGDDLALFHPEDFVPEPEGFLPKVKNREVRDWAVKVHSLWKNLSRKVSGKVKAHPSYHTLLPVPGNVVIPGSRFREVYYWDSYWVIRGLLVSKMYKTAKSIVINLISFIDEYGFVLNGARAYYTNRSQPPLLSAMIYEIYKGTGDVELVKRSLPALLKEYEFWNSDIHKVTVSDAQGCTHTLNRYNARWNKPRPESSTMDKASASNFTTVSEKQHFYRQLASAAESGWDFSTRWMRHPPNFTTLSTTSVIPVDLNAFILGMELNIAFFANVTGDNSTAKHFRQISDVRKEAINSIFWNANKKQWFDCWLSNASSEKVHVWDTLHQNKNVFASNFVPLWMKPFYSDATLVTNVLESLKTSGLLHAAGVATSLTNSGQQWDFPNGWAPLQHMLVEGLIKSGLKEARSLAEEIAIRWITTNYIVYKKTGVMHEKFDVEKCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRKIEC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06108 584 Gene3D - 45 582 IPR012341 GO:0005975
Vivi5g06108 584 Pfam Trehalase 61 575 IPR001661 GO:0004555|GO:0005991
Vivi5g06108 584 SUPERFAMILY Six-hairpin glycosidases 59 577 IPR008928 GO:0005975
Vivi5g06108 584 ProSitePatterns Trehalase signature 2. 485 494 IPR018232 GO:0004555|GO:0005991
Vivi5g06108 584 PRINTS Glycosyl hydrolase family 37 signature 478 494 IPR001661 GO:0004555|GO:0005991
Vivi5g06108 584 PRINTS Glycosyl hydrolase family 37 signature 290 307 IPR001661 GO:0004555|GO:0005991
Vivi5g06108 584 PRINTS Glycosyl hydrolase family 37 signature 357 374 IPR001661 GO:0004555|GO:0005991
Vivi5g06108 584 PRINTS Glycosyl hydrolase family 37 signature 325 342 IPR001661 GO:0004555|GO:0005991
Vivi5g06108 584 PRINTS Glycosyl hydrolase family 37 signature 400 416 IPR001661 GO:0004555|GO:0005991
Vivi5g06108 584 PRINTS Glycosyl hydrolase family 37 signature 558 571 IPR001661 GO:0004555|GO:0005991
Vivi5g06108 584 PRINTS Glycosyl hydrolase family 37 signature 220 238 IPR001661 GO:0004555|GO:0005991
Vivi5g06108 584 PANTHER TREHALASE 35 582 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06108 Vivi-Chr5 166209712 166214457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06108 35 584 Trehalose Biosynthesis Gene Families AT4G24040 57.942 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06108 K01194 - gmx:547539 927.546