Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06107 ATGGCCAATATTTTTTCATATTTATCACTCTCACTAACACTTCTCTTTACTCTTACACTTACCATTACAGTAACAGAATCATCAAAATTCATGGACGACGACGTGAAATCTTCCATTCCTCTAGTATCATTTCTCGAACGTCTTCAACAAACTGCATTTGATACATTCAACGATCCTAAATTCGACCCTAAAACCTATGTCGATTTACCTCTTAAATTTCCTCTTTCTGTAACTGACGCCGCCTTCCAGAATCTTCCGAAAACCTCCACCGGTGCTGTTTCTGTTAACGATTTAAAGGTTTTTATTGGTAAGTATTTTGAAGGTGCAGGGGATGATTTGGCGTTATTTCATCCAGAGGATTTTGTTCCCGAGCCGGAGGGCTTTTTGCCCAAAGTGAAGAACCGTGAGGTGAGAGATTGGGCGGTTAAGGTTCATTCTCTTTGGAAAAACTTGAGTAGGAAGGTATCTGGCAAGGTGAAGGCTCACCCTAGTTACCATACTCTTCTTCCTGTTCCTGGTAATGTTGTTATTCCTGGTTCGCGGTTTCGGGAGGTTTATTATTGGGATTCTTACTGGGTGATTAGAGGGTTGTTGGTGAGTAAAATGTATAAGACTGCTAAATCTATTGTCATCAATCTCATTTCCTTCATTGATGAGTATGGGTTTGTTCTTAATGGTGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCTCTCTTAAGCGCTATGATTTATGAGATATACAAAGGCACCGGTGATGTAGAATTAGTTAAAAGATCTCTACCTGCACTACTCAAAGAATATGAGTTTTGGAATTCAGATATACATAAAGTGACCGTATCGGATGCTCAAGGTTGCACTCACACCTTAAATCGCTATAACGCAAGGTGGAACAAACCCAGGCCCGAATCGTCCACAATGGACAAAGCATCTGCTTCCAATTTTACGACTGTTTCAGAAAAACAACATTTTTACCGTCAACTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGACACCCTCCTAACTTCACGACATTGTCTACAACATCAGTGATACCTGTTGATTTAAATGCATTTATACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAATGTTACCGGAGATAATAGCACTGCCAAACATTTCCGGCAAATTTCAGATGTTAGAAAGGAGGCAATAAACTCTATTTTCTGGAATGCAAACAAGAAACAGTGGTTTGATTGCTGGCTCAGCAATGCCTCATCTGAGGTGCATGTTTGGGATACTCTTCACCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTCTGTGGATGAAGCCATTTTACTCAGATGCTACACTTGTGACTAATGTTCTCGAAAGTCTCAAAACATCTGGCCTTCTTCATGCTGCTGGAGTTGCGACTTCTTTGACTAATTCAGGACAGCAGTGGGACTTTCCGAATGGTTGGGCTCCACTTCAACACATGTTAGTTGAAGGCCTTATTAAATCAGGGTTGAAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAGATGGATCACAACGAATTATATCGTTTACAAAAAAACAGGTGTAATGCACGAAAAGTTTGACGTTGAGAAATGCGGAGAATTCGGAGGTGGTGGTGAATACGTACCTCAGACTGGTTTTGGCTGGTCGAATGGAGTTGTGTTGGCATTCTTGGAAGAGTTTGGATGGCCTGAAGATCGTAAAATAGAATGCTGA 1752 0.4098 MANIFSYLSLSLTLLFTLTLTITVTESSKFMDDDVKSSIPLVSFLERLQQTAFDTFNDPKFDPKTYVDLPLKFPLSVTDAAFQNLPKTSTGAVSVNDLKVFIGKYFEGAGDDLALFHPEDFVPEPEGFLPKVKNREVRDWAVKVHSLWKNLSRKVSGKVKAHPSYHTLLPVPGNVVIPGSRFREVYYWDSYWVIRGLLVSKMYKTAKSIVINLISFIDEYGFVLNGARAYYTNRSQPPLLSAMIYEIYKGTGDVELVKRSLPALLKEYEFWNSDIHKVTVSDAQGCTHTLNRYNARWNKPRPESSTMDKASASNFTTVSEKQHFYRQLASAAESGWDFSTRWMRHPPNFTTLSTTSVIPVDLNAFILGMELNIAFFANVTGDNSTAKHFRQISDVRKEAINSIFWNANKKQWFDCWLSNASSEVHVWDTLHQNKNVFASNFVPLWMKPFYSDATLVTNVLESLKTSGLLHAAGVATSLTNSGQQWDFPNGWAPLQHMLVEGLIKSGLKEARSLAEEIAIRWITTNYIVYKKTGVMHEKFDVEKCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRKIEC 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06107 583 ProSitePatterns Trehalase signature 2. 484 493 IPR018232 GO:0004555|GO:0005991
Vivi5g06107 583 SUPERFAMILY Six-hairpin glycosidases 59 576 IPR008928 GO:0005975
Vivi5g06107 583 PRINTS Glycosyl hydrolase family 37 signature 220 238 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 PRINTS Glycosyl hydrolase family 37 signature 290 307 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 PRINTS Glycosyl hydrolase family 37 signature 357 374 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 PRINTS Glycosyl hydrolase family 37 signature 400 416 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 PRINTS Glycosyl hydrolase family 37 signature 477 493 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 PRINTS Glycosyl hydrolase family 37 signature 557 570 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 PRINTS Glycosyl hydrolase family 37 signature 325 342 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 PANTHER TREHALASE 35 581 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 Pfam Trehalase 61 574 IPR001661 GO:0004555|GO:0005991
Vivi5g06107 583 Gene3D - 45 581 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06107 Vivi-Chr5 166209711 166214457 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06107 35 583 Trehalose Biosynthesis Gene Families AT4G24040 57.866 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06107 K01194 - gmx:547539 931.398