Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06105 ATGGACGACGACGTGAAATCTTCCATTCCTCTAGTATCATTTCTCGAACGTCTTCAACAAACTGCATTTGATACATTCAACGATCCTAAATTCGACCCTAAAACCTATGTCGATTTACCTCTTAAATTTCCTCTTTCTGTAACTGACGCCGCCTTCCAGAATCTTCCGAAAACCTCCACCGGTGCTGTTTCTGTTAACGATTTAAAGGTTTTTATTGGTAAGTATTTTGAAGGTGCAGGGGATGATTTGGCGTTATTTCATCCAGAGGATTTTGTTCCCGAGCCGGAGGGCTTTTTGCCCAAAGTGAAGAACCGTGAGGTGAGAGATTGGGCGGTTAAGGTTCATTCTCTTTGGAAAAACTTGAGTAGGAAGGTATCTGGCAAGGTGAAGGCTCACCCTAGTTACCATACTCTTCTTCCTGTTCCTGGTAATGTTGTTATTCCTGGTTCGCGGTTTCGGGAGGTTTATTATTGGGATTCTTACTGGGTGATTAGAGGGTTGTTGGTGAGTAAAATGTATAAGACTGCTAAATCTATTGTCATCAATCTCATTTCCTTCATTGATGAGTATGGGTTTGTTCTTAATGGTGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCTCTCTTAAGCGCTATGATTTATGAGATATACAAAGGCACCGGTGATGTAGAATTAGTTAAAAGATCTCTACCTGCACTACTCAAAGAATATGAGTTTTGGAATTCAGATATACATAAAGTGACCGTATCGGATGCTCAAGGTTGCACTCACACCTTAAATCGCTATAACGCAAGGTGGAACAAACCCAGGCCCGAATCGTCCACAATGGACAAAGCATCTGCTTCCAATTTTACGACTGTTTCAGAAAAACAACATTTTTACCGTCAACTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGACACCCTCCTAACTTCACGACATTGTCTACAACATCAGTGATACCTGTTGATTTAAATGCATTTATACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAATGTTACCGGAGATAATAGCACTGCCAAACATTTCCGGCAAATTTCAGATGTTAGAAAGGAGGCAATAAACTCTATTTTCTGGAATGCAAACAAGAAACAGTGGTTTGATTGCTGGCTCAGCAATGCCTCATCTGAGAAGGTGCATGTTTGGGATACTCTTCACCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTCTGTGGATGAAGCCATTTTACTCAGATGCTACACTTGTGACTAATGTTCTCGAAAGTCTCAAAACATCTGGCCTTCTTCATGCTGCTGGAGTTGCGACTTCTTTGACTAATTCAGGACAGCAGTGGGACTTTCCGAATGGTTGGGCTCCACTTCAACACATGTTAGTTGAAGGCCTTATTAAATCAGGGTTGAAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAGATGGATCACAACGAATTATATCGTTTACAAAAAAACAGGTGTAATGCACGAAAAGTTTGACGTTGAGAAATGCGGAGAATTCGGAGGTGGTGGTGAATACGTACCTCAGACTGGTTTTGGCTGGTCGAATGGAGTTGTGTTGGCATTCTTGGAAGAGTTTGGATGGCCTGAAGATCGTAAAATAGAATGCTGA 1665 0.4156 MDDDVKSSIPLVSFLERLQQTAFDTFNDPKFDPKTYVDLPLKFPLSVTDAAFQNLPKTSTGAVSVNDLKVFIGKYFEGAGDDLALFHPEDFVPEPEGFLPKVKNREVRDWAVKVHSLWKNLSRKVSGKVKAHPSYHTLLPVPGNVVIPGSRFREVYYWDSYWVIRGLLVSKMYKTAKSIVINLISFIDEYGFVLNGARAYYTNRSQPPLLSAMIYEIYKGTGDVELVKRSLPALLKEYEFWNSDIHKVTVSDAQGCTHTLNRYNARWNKPRPESSTMDKASASNFTTVSEKQHFYRQLASAAESGWDFSTRWMRHPPNFTTLSTTSVIPVDLNAFILGMELNIAFFANVTGDNSTAKHFRQISDVRKEAINSIFWNANKKQWFDCWLSNASSEKVHVWDTLHQNKNVFASNFVPLWMKPFYSDATLVTNVLESLKTSGLLHAAGVATSLTNSGQQWDFPNGWAPLQHMLVEGLIKSGLKEARSLAEEIAIRWITTNYIVYKKTGVMHEKFDVEKCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRKIEC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06105 554 PRINTS Glycosyl hydrolase family 37 signature 295 312 IPR001661 GO:0004555|GO:0005991
Vivi5g06105 554 PRINTS Glycosyl hydrolase family 37 signature 327 344 IPR001661 GO:0004555|GO:0005991
Vivi5g06105 554 PRINTS Glycosyl hydrolase family 37 signature 370 386 IPR001661 GO:0004555|GO:0005991
Vivi5g06105 554 PRINTS Glycosyl hydrolase family 37 signature 190 208 IPR001661 GO:0004555|GO:0005991
Vivi5g06105 554 PRINTS Glycosyl hydrolase family 37 signature 260 277 IPR001661 GO:0004555|GO:0005991
Vivi5g06105 554 PRINTS Glycosyl hydrolase family 37 signature 528 541 IPR001661 GO:0004555|GO:0005991
Vivi5g06105 554 PRINTS Glycosyl hydrolase family 37 signature 448 464 IPR001661 GO:0004555|GO:0005991
Vivi5g06105 554 SUPERFAMILY Six-hairpin glycosidases 29 547 IPR008928 GO:0005975
Vivi5g06105 554 Gene3D - 15 552 IPR012341 GO:0005975
Vivi5g06105 554 ProSitePatterns Trehalase signature 2. 455 464 IPR018232 GO:0004555|GO:0005991
Vivi5g06105 554 PANTHER TREHALASE 11 552 IPR001661 GO:0004555|GO:0005991
Vivi5g06105 554 Pfam Trehalase 31 545 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06105 Vivi-Chr5 166209541 166214457 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06105 5 554 Trehalose Biosynthesis Gene Families AT4G24040 57.942 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06105 K01194 - gmx:547539 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06105 5 166209541 166214457 Vivi5g06105 5 166209541 166214457 ECH