Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi5g06083 | ATGGCTTCAACTCCCAAGAAGTCATCACTTCACTCTCCTTCAAAATCCAAGCTCCGATCACAATTCTCTCCTGTTGCAGCACCGGTTACTCCAAATTCCTTACCTGCACGTAGATCCACGCGCTTGAATTCACTCCTCACCGATTCTCCACAAACTCCCAATCTCGTTGATGCATTCAACGATTCTCAAAACCGAGATGAAACTCCCAAAAGAGGGAGGAGAATTGGACAGTATACTGAACCTGCTGCGAAATCTCGTCTTGATTTTGATTTCTCTCGCAAAGAGAAAGTTAGAACTCGCAATAGTGCGAGTAAACTAGAAAATGAGAGAGATAAGAAGAGTGAATCAGATATAATTCCCGTTGCTCTACAATCGCCTGGTAAACCGAAATCTGCAAAGAGGAAGAAGGAGAAGGAGGATGAGAAAACGGTTGAATTGGCGAAGAAGAGAAATGGGAAGGATAAGTCAGTTAAGGTTTTGTTTGCTCCAACATCGCCTGTACAATCGGAAACTAAGAAGAGGAAGAGGAAGAATGTGGTTGAGAAAACGGTTGTTACCAAGGGTAAAGGTTCTGTGAGTAAAGGGGGGAAAATTGCGAAGGTGCAGTATTATAAAAAAGTTGTTTATGATGGTGGTGAGTTTGAAGTTGGGGATGATGTTTATGTGAAGAGGATAGAAGATGGTAGCTCTGATGAGGAAGATCCTGAAGTAGAGGAGTGTAAGTTATGTTTTTGCTTTGGGGATGAGATTATGATTGAGTGTGATAGTTGTTTAGGTGGGTTTCATTTGAAATGTTTGAAGCCGCCTTTGAAGGATGTTCCTGAAGGGGATTGGATCTGCGGGATCTGTGAGGGTCGTAAGATGGGTAAAAATGTTGATTTCCCAAAGCCTCCGGAGGGCAAGAAGCTAGCTAGGACAATGCGGCAGAAGCTTCATTCAAGTGATTTGTGGGCTGCTCGTATTGAGAGTATATGGAAAGATGTGGACGGCAGCTATTGGTGTCGGGTACGGTGGTATATGATCCCAGAGGAGACTTCTGTTGGACGACAGCCGCATAACTTGAGCAGGGAGCTATATCGGACCAATGATTCTGCGAGCATTGAGATGGAATCTGTTCTTAGACATTGCTATGTCATGACCCCTAAGGAGTACGCCAAAGCTAGCAATGAGGGAGATGATGTTTTCTTGTGCGAATATGAATATGACATCCATTGGCACAGTTTCAAACGCCTGGCTGATATTGATGATGAAAGAGAGAATTCTGATGAGAGTGACGGTGACGAAGACTGGAACATCAGCAAGGAGTTAGACTCTGATACAGATGAAGATGTTGATTATGAAGAGGAAAATCTTAAAATTGCACAATCTCAACTACCGACAAGCCATCAGCTAGCTGCAAATCTGCACAAGGGACGCTTCTTCGGACTTCAGAAGATAGGAACAAAAAGAATTCCAGAGCATATAAGGTCTCACAAACAGACTAATCTTGAAAGAGCAAAGGCTTCACTGTTGTTAGCTTCGCTGCCTAAATCATTACCTTGTAGAAATAAAGAAATGGACGAGATAACTACATTTATTAAGGGTGCTATTTCTGACAATCAATGTCTGGGACGTTGCCTTTACATTCACGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTCTCAGTGATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCGTACTGTTTTGTGGAGATCAATGGTCTGAAATTGGCTTCGCCAGAGAATATTTATAAGGTCATATATGAGGCATTAAACGGACACAGGGTTGGATGGAAAGAGGCTCTCCGTTTACTAAATGAGAGGTTTGTTGAAGGGAAGAAAATTGAAGAAGAGGCTGACCGACCATGTATTTTGCTCATTGATGAACTTGATCTTCTTGTAACCAGAAATCAGTCGGTTCTGTACAATATCCTTGACTGGCCTACCAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCCAATACAATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATCCAAAGGCTTTGCTTTGCCCCATATAATTATCAGCAGCTTCAGGAAATCATTTCGAGTCGCCTCAATGGAATAGATATATTTGAAAAACAAGCTATGGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCTGGAGATGCACGCCGTGCTTTGGAAATATGCAGACGTGCAGCTGAAATTGCAGATTATCGTATTAAGAGTCTAGCTTCAAATCCTGATAATGTTGCTGCAGGAAAGGGACTTGTTAGCATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGATGAAAAACTGTTCCAGACTTAGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTACAAAACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAAATACGGTTTCATGTCTCTGTACCAGCAATGGGGAAGTGTTTCCTGGATATGATATCCTCCTGCAAGTTGGCTGTAAGCTGGGCGAGTGCCGGGTCATTTTGTGTGAAGCAGGTGCCAGGCACAGGTTGCAAAAGTTGCAGCTCAATTTCCCGAGTGATGATGTAGCCTTTTCGCTGAGAGACTGCAAAGATCTGCCTTGGCTGTCCAAATATCTAATGTAG | 2682 | 0.431 | MASTPKKSSLHSPSKSKLRSQFSPVAAPVTPNSLPARRSTRLNSLLTDSPQTPNLVDAFNDSQNRDETPKRGRRIGQYTEPAAKSRLDFDFSRKEKVRTRNSASKLENERDKKSESDIIPVALQSPGKPKSAKRKKEKEDEKTVELAKKRNGKDKSVKVLFAPTSPVQSETKKRKRKNVVEKTVVTKGKGSVSKGGKIAKVQYYKKVVYDGGEFEVGDDVYVKRIEDGSSDEEDPEVEECKLCFCFGDEIMIECDSCLGGFHLKCLKPPLKDVPEGDWICGICEGRKMGKNVDFPKPPEGKKLARTMRQKLHSSDLWAARIESIWKDVDGSYWCRVRWYMIPEETSVGRQPHNLSRELYRTNDSASIEMESVLRHCYVMTPKEYAKASNEGDDVFLCEYEYDIHWHSFKRLADIDDERENSDESDGDEDWNISKELDSDTDEDVDYEEENLKIAQSQLPTSHQLAANLHKGRFFGLQKIGTKRIPEHIRSHKQTNLERAKASLLLASLPKSLPCRNKEMDEITTFIKGAISDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVGWKEALRLLNERFVEGKKIEEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYQQLQEIISSRLNGIDIFEKQAMEFASRKVAAISGDARRALEICRRAAEIADYRIKSLASNPDNVAAGKGLVSMADVEAAIQEMFQAPHIQVMKNCSRLSKIFLTAMVHELYKTGMGETTFEKLANTVSCLCTSNGEVFPGYDILLQVGCKLGECRVILCEAGARHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYLM | 893 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi5g06083 | 893 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 506 | 749 | IPR027417 | - | |
| Vivi5g06083 | 893 | MobiDBLite | consensus disorder prediction | 130 | 151 | - | - | |
| Vivi5g06083 | 893 | FunFam | Origin recognition complex subunit 1 | 303 | 495 | - | - | |
| Vivi5g06083 | 893 | MobiDBLite | consensus disorder prediction | 418 | 443 | - | - | |
| Vivi5g06083 | 893 | Pfam | BAH domain | 319 | 409 | IPR001025 | GO:0003682 | |
| Vivi5g06083 | 893 | SMART | PHD_3 | 242 | 284 | IPR001965 | - | |
| Vivi5g06083 | 893 | Gene3D | - | 172 | 427 | IPR043151 | - | |
| Vivi5g06083 | 893 | Gene3D | - | 690 | 777 | - | - | |
| Vivi5g06083 | 893 | FunFam | Origin recognition complex subunit 1 | 689 | 781 | - | - | |
| Vivi5g06083 | 893 | MobiDBLite | consensus disorder prediction | 1 | 151 | - | - | |
| Vivi5g06083 | 893 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Vivi5g06083 | 893 | Pfam | AAA lid domain | 714 | 747 | IPR041083 | - | |
| Vivi5g06083 | 893 | ProSiteProfiles | Zinc finger PHD-type profile. | 237 | 286 | IPR019787 | - | |
| Vivi5g06083 | 893 | SMART | BAH_4 | 271 | 412 | IPR001025 | GO:0003682 | |
| Vivi5g06083 | 893 | MobiDBLite | consensus disorder prediction | 86 | 117 | - | - | |
| Vivi5g06083 | 893 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 344 | 887 | - | - | |
| Vivi5g06083 | 893 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 303 | IPR013083 | - | |
| Vivi5g06083 | 893 | MobiDBLite | consensus disorder prediction | 417 | 443 | - | - | |
| Vivi5g06083 | 893 | FunFam | Origin recognition complex subunit 1 | 493 | 692 | - | - | |
| Vivi5g06083 | 893 | ProSitePatterns | Zinc finger PHD-type signature. | 240 | 283 | IPR019786 | - | |
| Vivi5g06083 | 893 | FunFam | Origin recognition complex subunit 1 | 235 | 302 | - | - | |
| Vivi5g06083 | 893 | ProSiteProfiles | BAH domain profile. | 295 | 412 | IPR001025 | GO:0003682 | |
| Vivi5g06083 | 893 | SUPERFAMILY | FYVE/PHD zinc finger | 225 | 288 | IPR011011 | - | |
| Vivi5g06083 | 893 | SMART | AAA_5 | 536 | 690 | IPR003593 | GO:0016887 | |
| Vivi5g06083 | 893 | Pfam | ATPase family associated with various cellular activities (AAA) | 541 | 686 | IPR003959 | GO:0005524|GO:0016887 | |
| Vivi5g06083 | 893 | Gene3D | - | 492 | 689 | IPR027417 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi5g06083 | 135 | 892 | Core DNA Replication Machinery Family | AT4G14700 | 66.406 | 0.0 | 1017 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi5g06083 | K02603 | - | gmx:100798547 | 1290.4 |