Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06075 ATGCTGATTTATCTTCATTGCTTTATTATAGCTCTTCAGGTATATGATACCATAGGGAGCAATAAAGTTGAAGATGGCTCATTCTTCAGAGATGATGACTGGTCGATTGATGGGAAGAATAACAGTTTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTAACTTGCTTGGATGGTGATGGATGCAAAATTCGAAATGGATTGACAAGCATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGCGATTCATGTGATCTATGGTATCACGCCTTCTGCGTGGGATTTGATACTGAAGGTACATCTGAAAGCACATGGTTATGCCCACGATGCGGGGTTGATGAAGTTTCTAAAGAAACAGATACCAGTTCAATAAAGGAGGCTACCCTGGAGTGTAACCCAGGTGATAATAACAGTGAAATTCATGCTGAGGGTTCCTTTTCAGGAATAGTGTCTGTTTCCATTGCTGATACTGGAGAGACAGCTGTTGTTGTCTCAATGGTTGACCGAAACAAATGGGTTCAAGAAACAAACGAGAGAGGCCTTTTTCCTCCTGAAGTTGATGGGGATCGGTTGACTGAATCATGTAATTTAATGCCTGATACTAATAGTCAGCCGCAGGCAGCAGAGAAGACAACTTTGTCACCAATCATGAAGAGAGAAGAACTAGAGCTGTCCTTATCACAACCAACTTCTAAATCCTTCATGCATAATGATTTAAAGAAAAGAGATAATGGAACAAGATGTGAGCTGAGTAGCTTTGATGGAACCAAGTTATTTGATGAGTCCCAAGCCAAAACTAGTCCATGCAAAACTGAACCTGATATGGGTCTTCATCTGGGTTTATCGGTGGGCTCTTTTTTAACTGTTGATAATTTAGACACGAGCCAAACAAAAGATCAAGCAACTGATGCCCCGTGCTCAAGTCCTGAAGATTTTCCTTCAAAAGGAGATGAAATGGAAATCAATGCTTGTGAGGACAGCGCCAGAGTGGCTGGTAGAAAGAGGAAGCATTTTGATTACAGTCATGAGCAAGTTCATACAAAAGCTGATGATGAAGATGACAAGCCTGAACTATTGGTTGAAGCTTCACAAAAGAAAATTAGAGCAGCCGATAGTCAAATTATTAGTGCTAATGACTTGGCCGACGCTCAACTTTCTGACAATGCTAAGAAAAATCCCGCTCTAAAACATTCTCCAACAAAGGAGATTGCGGCATCCGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCTTTCCAAGGGACTAGCTGACACTAATGCGAGTGAAAAGTTAGCTGAAAAGAAAGGAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAAAGAGTTTCTGATGATGGAGAGTCATCCTCAGTTGTCCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCTCAACAAATCCTCTATAAACTTTGAGGACAACCGTTTTGATAAAAATCTTCTTGAAGCTTTTAGGGTTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCTGCAGCTCTGAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTACGGGAAAATCTAACTAGGAAAATTTTCGCGACATCCAATGGAAGGAGAAAGCGTGCATGGGATAGGGATTGTGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGCTTCAAAGCCTGAAAAGATCGAAACTTTAAAATCAGTTCTCGATCTTTTAAGAAAAAGTTCGGAGAATCCAGAGTCAGAGCAAACTCCCAGCTGTCAGGCCAAGAATCCAATTCTTTCCAGATTGTACATAGCAGATACATCTGTTTTCCCACGGAAACAGGATGTCAAACCTTTCTCAGAGCAAACTAAACAAAATAACCCTTCAGCAAAAGGAACAAATCAGTCTGTTGATAACAAGCCTATTAAAGCAACGGAGGTAAATTCCCTCTTATCAAAGACCAAAGTTTGTTCATCTGAGAAAAAAGTAGATAAGAAGATTGTACATGGTCCAGTTGGTAAAGTACCATTGAGCAGTCACTCAGAAGGAACATCAGTATCATCTTCTGCCGGTGCAAAAGTTGGCACAAAGGAGTCGGGCCTTAAATCTGATTCTGTGAAAGGTGATAAAAGAAAATGGGCTTTGGAGGTTCTTGCGAGGAAAACAGCTGTTGGAAGCAAGAGCACAGCTAATGAAAGCCAGGAAGACGATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGACATGCGACCAGCGTTGGAACCTTGTCGCCACAATAAAATTCCTGTATCCGTGAGGCAGGCACAGCTTTACCGCCTGACGGAACGTTTATTGAAGAACGCAAATCTGCCAATCATTCGTAGAACTGCAGACACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCCAGTGTATCTGAATCTTTGTTCACAAGAACTATTGCATCGCACAAATAAAACAAAATCGAATGTAGACACAGACACAACTCCACCAACCTCGTCTCCAGTACATACTGATCAATCAGAACGAAATACTGATGATCTTTCGTCTGACCCTGACGTTCAATTAGCATTGAAAAATGCTGGTCTGTTTGATTCGCCACCAAGCAGTCCTCAGGAGAACAATGAAAGATGTAATGAAAATGAAGTATCAGGGCCCAATGATATACTTGAACTAGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGATGATTACATATGTGCTAGTGTTACAAAGGTCCCAAATCTAAAACAAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTCTCCACCACGAGCTTGAAGAAAACAAATAATGATTTGGATTGTGCAGACTGTAGGGGGTCTGAAAACAATGAAGTGCCAGGAGAGGCCTCTTGCTCACCAAACTGTCAAAATGATGCAGTCCACAAGGATTCTACCATTGATGCAGAGATTGGCCAGCCTTCGGTTTCTTCTGGGGTTCTACCATGTGAGGATACTGTTGAGCCAGCTGATTCAGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTTATAAAAAAGTTTCCAGATGGCGAATTACGATCATTACATGGAGAGGGCAAGACTGAATCTCAAAGTGAGAATAATAATTGCCATAAGGACGAAGAACATGTCTTAGACAAAGCAGTAAATGGGGCTGAATTAGGGAATGAGAATCGCTCAGGAAATGTGCTTGTCCCTACCGTCACTGATAAATCTTCTAATATATCTGGGACTGATGAAAATATTCAAAGGAAGAAAGAGAAATCTGACATCCCTGCTCAGCAGTCTAACAATGAAAATCAAATAGCAAAGAAGGTAGAAGCCTATATCAAGGAGCATATCAGGCCACTATGCAAGAGTGGTGTGATCACGGCGGAGCAGTACAGGTGGGCTGTTGCAAAAACAACTGAAAAGGTTATGAAATATCATTGCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAATATGTTGAAGCAGCCCAACAGAATGGAAAAAATTGA 3621 0.4043 MLIYLHCFIIALQVYDTIGSNKVEDGSFFRDDDWSIDGKNNSLSFPSYYIDENAVTCLDGDGCKIRNGLTSIEEDSGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRCGVDEVSKETDTSSIKEATLECNPGDNNSEIHAEGSFSGIVSVSIADTGETAVVVSMVDRNKWVQETNERGLFPPEVDGDRLTESCNLMPDTNSQPQAAEKTTLSPIMKREELELSLSQPTSKSFMHNDLKKRDNGTRCELSSFDGTKLFDESQAKTSPCKTEPDMGLHLGLSVGSFLTVDNLDTSQTKDQATDAPCSSPEDFPSKGDEMEINACEDSARVAGRKRKHFDYSHEQVHTKADDEDDKPELLVEASQKKIRAADSQIISANDLADAQLSDNAKKNPALKHSPTKEIAASDIMNIVKGTNRRLSKGLADTNASEKLAEKKGNMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAVLNKSSINFEDNRFDKNLLEAFRVAITGPKTELVNKLSPAALKAKKSMLQKGKVRENLTRKIFATSNGRRKRAWDRDCEIEFWKYRCTRASKPEKIETLKSVLDLLRKSSENPESEQTPSCQAKNPILSRLYIADTSVFPRKQDVKPFSEQTKQNNPSAKGTNQSVDNKPIKATEVNSLLSKTKVCSSEKKVDKKIVHGPVGKVPLSSHSEGTSVSSSAGAKVGTKESGLKSDSVKGDKRKWALEVLARKTAVGSKSTANESQEDDAVFKGNYPLLAQLPTDMRPALEPCRHNKIPVSVRQAQLYRLTERLLKNANLPIIRRTADTELAVADAINIEKEVADRSNSKPVYLNLCSQELLHRTNKTKSNVDTDTTPPTSSPVHTDQSERNTDDLSSDPDVQLALKNAGLFDSPPSSPQENNERCNENEVSGPNDILELDSHPELDIYGDFEYDLEDDDYICASVTKVPNLKQEQSEPKVKLVFSTTSLKKTNNDLDCADCRGSENNEVPGEASCSPNCQNDAVHKDSTIDAEIGQPSVSSGVLPCEDTVEPADSEFEELYGPDKEPLIKKFPDGELRSLHGEGKTESQSENNNCHKDEEHVLDKAVNGAELGNENRSGNVLVPTVTDKSSNISGTDENIQRKKEKSDIPAQQSNNENQIAKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKSKNANFLIKEGEKVKKLAEQYVEAAQQNGKN 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 1083 1129 - -
Vivi5g06075 1206 Pfam PHD-finger 79 113 IPR019787 -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 298 321 - -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 674 708 - -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 681 697 - -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 1085 1109 - -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 1048 1069 - -
Vivi5g06075 1206 SMART PHD_3 62 114 IPR001965 -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 836 902 - -
Vivi5g06075 1206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 120 IPR013083 -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 620 645 - -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 836 858 - -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 623 645 - -
Vivi5g06075 1206 SUPERFAMILY FYVE/PHD zinc finger 79 118 IPR011011 -
Vivi5g06075 1206 PANTHER RING FINGER PROTEIN 41, 151 45 1197 - -
Vivi5g06075 1206 MobiDBLite consensus disorder prediction 884 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06075 Vivi-Chr5 165798957 165809384 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi5g06075 PHD 7.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06075 - - gmx:100808102 1668.29