Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06074 ATGGAATCAGATTTCGAGACGAACGATACGCTCACACTGTCCCAGGATCCATTTGATGCCAACGACAATGATAATTTGGATGCTGAAGGCGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTATTGGATTGCTGTCAGCACTGGTTCTGCTTCGTATGTATTGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACCTGTGTTCCAGTATATGATACCATAGGGAGCAATAAAGTTGAAGATGGCTCATTCTTCAGAGATGATGACTGGTCGATTGATGGGAAGAATAACAGTTTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTAACTTGCTTGGATGGTGATGGATGCAAAATTCGAAATGGATTGACAAGCATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGCGATTCATGTGATCTATGGTATCACGCCTTCTGCGTGGGATTTGATACTGAAGGTACATCTGAAAGCACATGGTTATGCCCACGATGCGGGGTTGATGAAGTTTCTAAAGAAACAGATACCAGTTCAATAAAGGAGGCTACCCTGGAGTGTAACCCAGGTGATAATAACAGTGAAATTCATGCTGAGGGTTCCTTTTCAGGAATAGTGTCTGTTTCCATTGCTGATACTGGAGAGACAGCTGTTGTTGTCTCAATGGTTGACCGAAACAAATGGGTTCAAGAAACAAACGAGAGAGGCCTTTTTCCTCCTGAAGTTGATGGGGATCGGTTGACTGAATCATGTAATTTAATGCCTGATACTAATAGTCAGCCGCAGGCAGCAGAGAAGACAACTTTGTCACCAATCATGAAGAGAGAAGAACTAGAGCTGTCCTTATCACAACCAACTTCTAAATCCTTCATGCATAATGATTTAAAGAAAAGAGATAATGGAACAAGATGTGAGCTGAGTAGCTTTGATGGAACCAAGTTATTTGATGAGTCCCAAGCCAAAACTAGTCCATGCAAAACTGAACCTGATATGGGTCTTCATCTGGGTTTATCGGTGGGCTCTTTTTTAACTGTTGATAATTTAGACACGAGCCAAACAAAAGATCAAGCAACTGATGCCCCGTGCTCAAGTCCTGAAGATTTTCCTTCAAAAGGAGATGAAATGGAAATCAATGCTTGTGAGGACAGCGCCAGAGTGGCTGGTAGAAAGAGGAAGCATTTTGATTACAGTCATGAGCAAGTTCATACAAAAGCTGATGATGAAGATGACAAGCCTGAACTATTGGTTGAAGCTTCACAAAAGAAAATTAGAGCAGCCGATAGTCAAATTATTAGTGCTAATGACTTGGCCGACGCTCAACTTTCTGACAATGCTAAGAAAAATCCCGCTCTAAAACATTCTCCAACAAAGGAGATTGCGGCATCCGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCTTTCCAAGGGACTAGCTGACACTAATGCGAGTGAAAAGTTAGCTGAAAAGAAAGGAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAAAGAGTTTCTGATGATGGAGAGTCATCCTCAGTTGTCCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCTCAACAAATCCTCTATAAACTTTGAGGACAACCGTTTTGATAAAAATCTTCTTGAAGCTTTTAGGGTTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCTGCAGCTCTGAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTACGGGAAAATCTAACTAGGAAAATTTTCGCGACATCCAATGGAAGGAGAAAGCGTGCATGGGATAGGGATTGTGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGCTTCAAAGCCTGAAAAGATCGAAACTTTAAAATCAGTTCTCGATCTTTTAAGAAAAAGTTCGGAGAATCCAGAGTCAGAGCAAACTCCCAGCTGTCAGGCCAAGAATCCAATTCTTTCCAGATTGTACATAGCAGATACATCTGTTTTCCCACGGAAACAGGATGTCAAACCTTTCTCAGAGCAAACTAAACAAAATAACCCTTCAGCAAAAGGAACAAATCAGTCTGTTGATAACAAGCCTATTAAAGCAACGGAGGTAAATTCCCTCTTATCAAAGACCAAAGTTTGTTCATCTGAGAAAAAAGTAGATAAGAAGATTGTACATGGTCCAGTTGGTAAAGTACCATTGAGCAGTCACTCAGAAGGAACATCAGTATCATCTTCTGCCGGTGCAAAAGTTGGCACAAAGGAGTCGGGCCTTAAATCTGATTCTGTGAAAGGTGATAAAAGAAAATGGGCTTTGGAGGTTCTTGCGAGGAAAACAGCTGTTGGAAGCAAGAGCACAGCTAATGAAAGCCAGGAAGACGATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGACATGCGACCAGCGTTGGAACCTTGTCGCCACAATAAAATTCCTGTATCCGTGAGGCAGGCACAGCTTTACCGCCTGACGGAACGTTTATTGAAGAACGCAAATCTGCCAATCATTCGTAGAACTGCAGACACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCCAGTGTATCTGAATCTTTGTTCACAAGAACTATTGCATCGCACAAATAAAACAAAATCGAATGTAGACACAGACACAACTCCACCAACCTCGTCTCCAGTACATACTGATCAATCAGAACGAAATACTGATGATCTTTCGTCTGACCCTGACGTTCAATTAGCATTGAAAAATGCTGGTCTGTTTGATTCGCCACCAAGCAGTCCTCAGGAGAACAATGAAAGATGTAATGAAAATGAAGTATCAGGGCCCAATGATATACTTGAACTAGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGATGATTACATATGTGCTAGTGTTACAAAGGTCCCAAATCTAAAACAAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTCTCCACCACGAGCTTGAAGAAAACAAATAATGATTTGGATTGTGCAGACTGTAGGGGGTCTGAAAACAATGAAGTGCCAGGAGAGGCCTCTTGCTCACCAAACTGTCAAAATGATGCAGTCCACAAGGATTCTACCATTGATGCAGAGATTGGCCAGCCTTCGGTTTCTTCTGGGGTTCTACCATGTGAGGATACTGTTGAGCCAGCTGATTCAGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTTATAAAAAAGTTTCCAGATGGCGAATTACGATCATTACATGGAGAGGGCAAGACTGAATCTCAAAGTGAGAATAATAATTGCCATAAGGACGAAGAACATGTCTTAGACAAAGCAGTAAATGGGGCTGAATTAGGGAATGAGAATCGCTCAGGAAATGTGCTTGTCCCTACCGTCACTGATAAATCTTCTAATATATCTGGGACTGATGAAAATATTCAAAGGAAGAAAGAGAAATCTGACATCCCTGCTCAGCAGTCTAACAATGAAAATCAAATAGCAAAGAAGGTAGAAGCCTATATCAAGGAGCATATCAGGCCACTATGCAAGAGTGGTGTGATCACGGCGGAGCAGTACAGGTGGGCTGTTGCAAAAACAACTGAAAAGGTTATGAAATATCATTGCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAATATGTTGAAGCAGCCCAACAGAATGGAAAAAATTGA 3828 0.4078 MESDFETNDTLTLSQDPFDANDNDNLDAEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSFFRDDDWSIDGKNNSLSFPSYYIDENAVTCLDGDGCKIRNGLTSIEEDSGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRCGVDEVSKETDTSSIKEATLECNPGDNNSEIHAEGSFSGIVSVSIADTGETAVVVSMVDRNKWVQETNERGLFPPEVDGDRLTESCNLMPDTNSQPQAAEKTTLSPIMKREELELSLSQPTSKSFMHNDLKKRDNGTRCELSSFDGTKLFDESQAKTSPCKTEPDMGLHLGLSVGSFLTVDNLDTSQTKDQATDAPCSSPEDFPSKGDEMEINACEDSARVAGRKRKHFDYSHEQVHTKADDEDDKPELLVEASQKKIRAADSQIISANDLADAQLSDNAKKNPALKHSPTKEIAASDIMNIVKGTNRRLSKGLADTNASEKLAEKKGNMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAVLNKSSINFEDNRFDKNLLEAFRVAITGPKTELVNKLSPAALKAKKSMLQKGKVRENLTRKIFATSNGRRKRAWDRDCEIEFWKYRCTRASKPEKIETLKSVLDLLRKSSENPESEQTPSCQAKNPILSRLYIADTSVFPRKQDVKPFSEQTKQNNPSAKGTNQSVDNKPIKATEVNSLLSKTKVCSSEKKVDKKIVHGPVGKVPLSSHSEGTSVSSSAGAKVGTKESGLKSDSVKGDKRKWALEVLARKTAVGSKSTANESQEDDAVFKGNYPLLAQLPTDMRPALEPCRHNKIPVSVRQAQLYRLTERLLKNANLPIIRRTADTELAVADAINIEKEVADRSNSKPVYLNLCSQELLHRTNKTKSNVDTDTTPPTSSPVHTDQSERNTDDLSSDPDVQLALKNAGLFDSPPSSPQENNERCNENEVSGPNDILELDSHPELDIYGDFEYDLEDDDYICASVTKVPNLKQEQSEPKVKLVFSTTSLKKTNNDLDCADCRGSENNEVPGEASCSPNCQNDAVHKDSTIDAEIGQPSVSSGVLPCEDTVEPADSEFEELYGPDKEPLIKKFPDGELRSLHGEGKTESQSENNNCHKDEEHVLDKAVNGAELGNENRSGNVLVPTVTDKSSNISGTDENIQRKKEKSDIPAQQSNNENQIAKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKSKNANFLIKEGEKVKKLAEQYVEAAQQNGKN 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06074 1275 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 1152 1198 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 750 766 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 743 777 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 1154 1178 - -
Vivi5g06074 1275 Pfam Ring finger domain 32 72 IPR001841 -
Vivi5g06074 1275 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 689 714 - -
Vivi5g06074 1275 PANTHER RING FINGER PROTEIN 41, 151 114 1266 - -
Vivi5g06074 1275 SUPERFAMILY FYVE/PHD zinc finger 148 187 IPR011011 -
Vivi5g06074 1275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 189 IPR013083 -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g06074 1275 SMART ring_2 33 71 IPR001841 -
Vivi5g06074 1275 SUPERFAMILY RING/U-box 25 78 - -
Vivi5g06074 1275 SMART PHD_3 131 183 IPR001965 -
Vivi5g06074 1275 Pfam PHD-finger 148 182 IPR019787 -
Vivi5g06074 1275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 110 IPR013083 -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 367 390 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 1 21 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 692 714 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 905 927 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 1117 1138 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 953 970 - -
Vivi5g06074 1275 MobiDBLite consensus disorder prediction 905 971 - -
Vivi5g06074 1275 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06074 Vivi-Chr5 165798310 165809380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06074 33 84 C3H Transcription Factor Family AT3G58030 37.037 8.80e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi5g06074 PHD 8.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06074 - - gmx:100808102 1824.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06074 5 165798310 165809380 Vivi5g06074 5 165798310 165809380 ECH