Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06073 ATGGAATCAGATTTCGAGACGAACGATACGCTCACACTGTCCCAGGATCCATTTGATGCCAACGACAATCAGGATAATTTGGATGCTGAAGGCGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTATTGGATTGCTGTCAGCACTGGTTCTGCTTCGTATGTATTGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACCTGTGTTCCAGTATATGATACCATAGGGAGCAATAAAGTTGAAGATGGCTCATTCTTCAGAGATGATGACTGGTCGATTGATGGGAAGAATAACAGTTTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTAACTTGCTTGGATGGTGATGGATGCAAAATTCGAAATGGATTGACAAGCATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGCGATTCATGTGATCTATGGTATCACGCCTTCTGCGTGGGATTTGATACTGAAGGTACATCTGAAAGCACATGGTTATGCCCACGATGCGGGGTTGATGAAGTTTCTAAAGAAACAGATACCAGTTCAATAAAGGAGGCTACCCTGGAGTGTAACCCAGGTGATAATAACAGTGAAATTCATGCTGAGGGTTCCTTTTCAGGAATAGTGTCTGTTTCCATTGCTGATACTGGAGAGACAGCTGTTGTTGTCTCAATGGTTGACCGAAACAAATGGGTTCAAGAAACAAACGAGAGAGGCCTTTTTCCTCCTGAAGTTGATGGGGATCGGTTGACTGAATCATGTAATTTAATGCCTGATACTAATAGTCAGCCGCAGGCAGCAGAGAAGACAACTTTGTCACCAATCATGAAGAGAGAAGAACTAGAGCTGTCCTTATCACAACCAACTTCTAAATCCTTCATGCATAATGATTTAAAGAAAAGAGATAATGGAACAAGATGTGAGCTGAGTAGCTTTGATGGAACCAAGTTATTTGATGAGTCCCAAGCCAAAACTAGTCCATGCAAAACTGAACCTGATATGGGTCTTCATCTGGGTTTATCGGTGGGCTCTTTTTTAACTGTTGATAATTTAGACACGAGCCAAACAAAAGATCAAGCAACTGATGCCCCGTGCTCAAGTCCTGAAGATTTTCCTTCAAAAGGAGATGAAATGGAAATCAATGCTTGTGAGGACAGCGCCAGAGTGGCTGGTAGAAAGAGGAAGCATTTTGATTACAGTCATGAGCAAGTTCATACAAAAGCTGATGATGAAGATGACAAGCCTGAACTATTGGTTGAAGCTTCACAAAAGAAAATTAGAGCAGCCGATAGTCAAATTATTAGTGCTAATGACTTGGCCGACGCTCAACTTTCTGACAATGCTAAGAAAAATCCCGCTCTAAAACATTCTCCAACAAAGGAGATTGCGGCATCCGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCTTTCCAAGGGACTAGCTGACACTAATGCGAGTGAAAAGTTAGCTGAAAAGAAAGGAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAAAGAGTTTCTGATGATGGAGAGTCATCCTCAGTTGTCCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCTCAACAAATCCTCTATAAACTTTGAGGACAACCGTTTTGATAAAAATCTTCTTGAAGCTTTTAGGGTTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCTGCAGCTCTGAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTACGGGAAAATCTAACTAGGAAAATTTTCGCGACATCCAATGGAAGGAGAAAGCGTGCATGGGATAGGGATTGTGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGCTTCAAAGCCTGAAAAGATCGAAACTTTAAAATCAGTTCTCGATCTTTTAAGAAAAAGTTCGGAGAATCCAGAGTCAGAGCAAACTCCCAGCTGTCAGGCCAAGAATCCAATTCTTTCCAGATTGTACATAGCAGATACATCTGTTTTCCCACGGAAACAGGATGTCAAACCTTTCTCAGAGCAAACTAAACAAAATAACCCTTCAGCAAAAGGAACAAATCAGTCTGTTGATAACAAGCCTATTAAAGCAACGGAGGTAAATTCCCTCTTATCAAAGACCAAAGTTTGTTCATCTGAGAAAAAAGTAGATAAGAAGATTGTACATGGTCCAGTTGGTAAAGTACCATTGAGCAGTCACTCAGAAGGAACATCAGTATCATCTTCTGCCGGTGCAAAAGTTGGCACAAAGGAGTCGGGCCTTAAATCTGATTCTGTGAAAGGTGATAAAAGAAAATGGGCTTTGGAGGTTCTTGCGAGGAAAACAGCTGTTGGAAGCAAGAGCACAGCTAATGAAAGCCAGGAAGACGATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGACATGCGACCAGCGTTGGAACCTTGTCGCCACAATAAAATTCCTGTATCCGTGAGGCAGGCACAGCTTTACCGCCTGACGGAACGTTTATTGAAGAACGCAAATCTGCCAATCATTCGTAGAACTGCAGACACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCCAGTGTATCTGAATCTTTGTTCACAAGAACTATTGCATCGCACAAATAAAACAAAATCGAATGTAGACACAGACACAACTCCACCAACCTCGTCTCCAGTACATACTGATCAATCAGAACGAAATACTGATGATCTTTCGTCTGACCCTGACGTTCAATTAGCATTGAAAAATGCTGGTCTGTTTGATTCGCCACCAAGCAGTCCTCAGGAGAACAATGAAAGATGTAATGAAAATGAAGTATCAGGGCCCAATGATATACTTGAACTAGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGATGATTACATATGTGCTAGTGTTACAAAGGTCCCAAATCTAAAACAAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTCTCCACCACGAGCTTGAAGAAAACAAATAATGATTTGGATTGTGCAGACTGTAGGGGGTCTGAAAACAATGAAGTGCCAGGAGAGGCCTCTTGCTCACCAAACTGTCAAAATGATGCAGTCCACAAGGATTCTACCATTGATGCAGAGATTGGCCAGCCTTCGGTTTCTTCTGGGGTTCTACCATGTGAGGATACTGTTGAGCCAGCTGATTCAGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTTATAAAAAAGTTTCCAGATGGCGAATTACGATCATTACATGGAGAGGGCAAGACTGAATCTCAAAGTGAGAATAATAATTGCCATAAGGACGAAGAACATGTCTTAGACAAAGCAGTAAATGGGGCTGAATTAGGGAATGAGAATCGCTCAGGAAATGTGCTTGTCCCTACCGTCACTGATAAATCTTCTAATATATCTGGGACTGATGAAAATATTCAAAGGAAGAAAGAGAAATCTGACATCCCTGCTCAGCAGTCTAACAATGAAAATCAAATAGCAAAGAAGGTAGAAGCCTATATCAAGGAGCATATCAGGCCACTATGCAAGAGTGGTGTGATCACGGCGGAGCAGTACAGGTGGGCTGTTGCAAAAACAACTGAAAAGGTTATGAAATATCATTGCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAATATGTTGAAGCAGCCCAACAGAATGGAAAAAATTGA 3831 0.408 MESDFETNDTLTLSQDPFDANDNQDNLDAEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSFFRDDDWSIDGKNNSLSFPSYYIDENAVTCLDGDGCKIRNGLTSIEEDSGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRCGVDEVSKETDTSSIKEATLECNPGDNNSEIHAEGSFSGIVSVSIADTGETAVVVSMVDRNKWVQETNERGLFPPEVDGDRLTESCNLMPDTNSQPQAAEKTTLSPIMKREELELSLSQPTSKSFMHNDLKKRDNGTRCELSSFDGTKLFDESQAKTSPCKTEPDMGLHLGLSVGSFLTVDNLDTSQTKDQATDAPCSSPEDFPSKGDEMEINACEDSARVAGRKRKHFDYSHEQVHTKADDEDDKPELLVEASQKKIRAADSQIISANDLADAQLSDNAKKNPALKHSPTKEIAASDIMNIVKGTNRRLSKGLADTNASEKLAEKKGNMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAVLNKSSINFEDNRFDKNLLEAFRVAITGPKTELVNKLSPAALKAKKSMLQKGKVRENLTRKIFATSNGRRKRAWDRDCEIEFWKYRCTRASKPEKIETLKSVLDLLRKSSENPESEQTPSCQAKNPILSRLYIADTSVFPRKQDVKPFSEQTKQNNPSAKGTNQSVDNKPIKATEVNSLLSKTKVCSSEKKVDKKIVHGPVGKVPLSSHSEGTSVSSSAGAKVGTKESGLKSDSVKGDKRKWALEVLARKTAVGSKSTANESQEDDAVFKGNYPLLAQLPTDMRPALEPCRHNKIPVSVRQAQLYRLTERLLKNANLPIIRRTADTELAVADAINIEKEVADRSNSKPVYLNLCSQELLHRTNKTKSNVDTDTTPPTSSPVHTDQSERNTDDLSSDPDVQLALKNAGLFDSPPSSPQENNERCNENEVSGPNDILELDSHPELDIYGDFEYDLEDDDYICASVTKVPNLKQEQSEPKVKLVFSTTSLKKTNNDLDCADCRGSENNEVPGEASCSPNCQNDAVHKDSTIDAEIGQPSVSSGVLPCEDTVEPADSEFEELYGPDKEPLIKKFPDGELRSLHGEGKTESQSENNNCHKDEEHVLDKAVNGAELGNENRSGNVLVPTVTDKSSNISGTDENIQRKKEKSDIPAQQSNNENQIAKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKSKNANFLIKEGEKVKKLAEQYVEAAQQNGKN 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06073 1276 PANTHER RING FINGER PROTEIN 41, 151 115 1267 - -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g06073 1276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 190 IPR013083 -
Vivi5g06073 1276 SUPERFAMILY FYVE/PHD zinc finger 149 188 IPR011011 -
Vivi5g06073 1276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 111 IPR013083 -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 906 928 - -
Vivi5g06073 1276 SUPERFAMILY RING/U-box 26 79 - -
Vivi5g06073 1276 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 954 971 - -
Vivi5g06073 1276 Pfam PHD-finger 149 183 IPR019787 -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 906 972 - -
Vivi5g06073 1276 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 751 767 - -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 1153 1199 - -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 744 778 - -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 368 391 - -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 693 715 - -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 1155 1179 - -
Vivi5g06073 1276 SMART ring_2 34 72 IPR001841 -
Vivi5g06073 1276 SMART PHD_3 132 184 IPR001965 -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 690 715 - -
Vivi5g06073 1276 Pfam Ring finger domain 33 73 IPR001841 -
Vivi5g06073 1276 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
Vivi5g06073 1276 MobiDBLite consensus disorder prediction 1118 1139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06073 Vivi-Chr5 165798310 165809385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06073 34 85 C3H Transcription Factor Family AT3G58030 37.037 8.81e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi5g06073 PHD 8.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06073 - - gmx:100808102 1819.67