Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06062 ATGGCTTCCTCAACTCTAACACCTGTTATATTTTTCACTATCTTCATTATTTTCGACCTTCAAACTTCTAAAGCCAAACAAACAATCTGCAAAACCTTATCATGCGGTGATATTGATATCACTTTTCCTTTCGATTTAACACAAACTACTCAAATTCAAGATCCTCGTTGTAGCTATTATCCAAATCCATCTTTCCAACTTTCATGCCACAAAAAAACACAAACAATCCTCAGCCTCCCCAATACAAACAACTTAATCATCAACAACATCGACTACAAAACCCAAACAATCCAAGTCAACGACCCCGAAGGTTGTCTCCCAAAACGTTACTTAGGAAATAATTTCAACCTTTCTGGTTCTCCTTTCAAACTAAACCCGGAAATTTACCGCTTGTATAATCTCACTCTTCTTAGTTGTCCTTCCAACGTATCATCTGAATTTCCTATAACACCGGTTTCTTGTCTAAGCGAACATGATTCGGACACGTCCCTTGTTGTTTCATGGGGAGAGCCTATTGAGGATACAACTTTGTCTGAAACATGCGAGGTGATTTCAAGAGGTCTTGTTCCGTTACCGAGGATGGATATGACTATGTGGCCATTTTGGGTTGATCTTAATAGTGATGTTGAGTTGGTGTGGAACAAACCTAGATGTGAGAAATGTGCAGTTAATGGTCAAGTTTGTGGATTCTCTGATGATGAGACAAATGGTCTTCAAGTTGAATGCTTCCCTAGTCCTTCCAATGGAGGTTTGTCTACAAGTGCCAAATACTGCATATCAATAGGAGTGGGACTACCGGGACTTCTCTGTCTAGTTGTAATTTGTTGCTTTATACGTGGTAAGATGAGGACACTCTTACCTCATAACCAAAGAACCTCAAATCATCCTTCAATAACAATTTCCTTAGAACCACTCCCTTCTTTTGTAACTGGCCTTGATGGTGCCACTATTGAAAAGTATCCTAAAATTCTTATCGGAGAAAGTGGACGTTTGTTGAAGCCTAGTGACAATACTTGCTCAATTTGTCTATCTGAATATGAACCTAAAGAGACATTGAGAAGTATACCTGAGTGCAACCATTATTTTCATGCTGCTTGTATTGATGAGTGGCTCAAAATGAATGGCACGTGTCCTATATGTAGGAATTCACCAGAGCCATATTCTTCTACCACTCCTTATTTATCTTCATTGTTATTATCCCCAAACTCTTCACCAATGACATCTTCACGATGA 1233 0.3893 MASSTLTPVIFFTIFIIFDLQTSKAKQTICKTLSCGDIDITFPFDLTQTTQIQDPRCSYYPNPSFQLSCHKKTQTILSLPNTNNLIINNIDYKTQTIQVNDPEGCLPKRYLGNNFNLSGSPFKLNPEIYRLYNLTLLSCPSNVSSEFPITPVSCLSEHDSDTSLVVSWGEPIEDTTLSETCEVISRGLVPLPRMDMTMWPFWVDLNSDVELVWNKPRCEKCAVNGQVCGFSDDETNGLQVECFPSPSNGGLSTSAKYCISIGVGLPGLLCLVVICCFIRGKMRTLLPHNQRTSNHPSITISLEPLPSFVTGLDGATIEKYPKILIGESGRLLKPSDNTCSICLSEYEPKETLRSIPECNHYFHAACIDEWLKMNGTCPICRNSPEPYSSTTPYLSSLLLSPNSSPMTSSR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06062 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 386 IPR013083 -
Vivi5g06062 410 SMART ring_2 339 380 IPR001841 -
Vivi5g06062 410 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 384 IPR046948 -
Vivi5g06062 410 Pfam Ring finger domain 337 381 IPR001841 -
Vivi5g06062 410 ProSiteProfiles Zinc finger RING-type profile. 339 381 IPR001841 -
Vivi5g06062 410 SUPERFAMILY RING/U-box 331 392 - -
Vivi5g06062 410 CDD RING-H2_EL5-like 339 381 - -
Vivi5g06062 410 Pfam Wall-associated receptor kinase galacturonan-binding 30 101 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06062 Vivi-Chr5 165672016 165675011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06062 30 386 C3H Transcription Factor Family AT2G46495 34.615 6.62e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06062 - - tpra:123915638 506.138