Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06061 ATGAAACATTTGTTTTTGGATTTAGTATTTGTTTTGTTGTTTTGGGTGAAGTGGTGTTTAGACTTTTTAGCAACGCTTCCTCTCACCTTTTGTTGCAACCATATGAATTCTCCTCCATCCATTAAAACCAGAACAAACACACTTTACATTAGAATGACAACTTTCTCATATTTAATTTCCTCAATCATCCTCGTATCACTACATGGAACAAAAAGTGAAGACTTCACATGTGGAACATCATCATGCGAAACCTTTGGACTTCCAATCAGATTCCCGTTTTCAACAAACCAGCCAAACCAAATCAATCTATGTAGTTACCCAGGTTTCGAACTCACCTGTAGCAACACCATCACCACCACTTTCAGTGAACCTTTACTCACTCTTCCAAACTCCGAAACCTTTGTCGTAAAACACATATCTTTCATTGACCAAACAGTTTGGGTCAACGATCCAAACAAGTGTCTTCCCAAACGTTTCATGTCTGACCATCATCATGATTTCATGTTAAACCTTAAAGATTCACCGTTTCGGTTAAGTGATTACTACACTTTTGTTAATGTTTCGTTCCTAAAATGTCCTTCGAATACAACTGTTTCATCTATGGTACATCGCATAAGTTGTTTGAACGTTGATTATCCGGTGGTGGCTATGAGGTCTGACGATACTCCGTTTGCAACTCCATGGACATCTTTGTGTGAGTTTATTACGTCGGCTATGGTGCCAGTTGAAGACACAAACTGGTTGTTCTGGAATGATTATTACTCAAATATACCGTTGCAGTGGGATAATCCAGATTGTGGAAGTTGTGAAGAACGTGGAGGAACGTGTGGTTTGGTTGGGGAAGATGTTCTTCGTCTTGCTTGTTATGATCTTCCCAAACAAGATGTAGGTCTATCAAAGAAAGTGAAGTATGGTTTAAGTATGGGTCTGGCAATACCTGCACTGCTAGGTATTATTATACTAACATGGATGCTATGCAACAATAAGAACACAAGAAATCAAGCACAAAACCAACGTCAAACAGGAACAGAATTTTCAACTCTGGTTATGCCTCATCCCCCAATTGTTTTTATGGGCCTTGATAATGCAAGAATTGAAAGGTATCCTAAAATCCAACTTGGTGAAAGTGGACGATTGCCTAGGCTTGATGATAATATTTGCTCCATATGTCTTTGTGAGTATCAGCCCAATGAAGTATTGAGGACTATTCCTGAATGTAAGCACTATTTTCATGCTAATTGTATAGATGGATGGCTCAAGACAAATGCTACTTGCCCTTTGTGTAGAAATTTTCCAGAGATATCTACCTCGTTTGCTTCGGTTTTGCCTGTATCTCCGACTTTGTAA 1347 0.3883 MKHLFLDLVFVLLFWVKWCLDFLATLPLTFCCNHMNSPPSIKTRTNTLYIRMTTFSYLISSIILVSLHGTKSEDFTCGTSSCETFGLPIRFPFSTNQPNQINLCSYPGFELTCSNTITTTFSEPLLTLPNSETFVVKHISFIDQTVWVNDPNKCLPKRFMSDHHHDFMLNLKDSPFRLSDYYTFVNVSFLKCPSNTTVSSMVHRISCLNVDYPVVAMRSDDTPFATPWTSLCEFITSAMVPVEDTNWLFWNDYYSNIPLQWDNPDCGSCEERGGTCGLVGEDVLRLACYDLPKQDVGLSKKVKYGLSMGLAIPALLGIIILTWMLCNNKNTRNQAQNQRQTGTEFSTLVMPHPPIVFMGLDNARIERYPKIQLGESGRLPRLDDNICSICLCEYQPNEVLRTIPECKHYFHANCIDGWLKTNATCPLCRNFPEISTSFASVLPVSPTL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06061 448 ProSiteProfiles Zinc finger RING-type profile. 387 429 IPR001841 -
Vivi5g06061 448 Pfam Wall-associated receptor kinase galacturonan-binding 77 150 IPR025287 GO:0030247
Vivi5g06061 448 Pfam Ring finger domain 386 429 IPR001841 -
Vivi5g06061 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 433 IPR013083 -
Vivi5g06061 448 CDD RING-H2_EL5-like 386 429 - -
Vivi5g06061 448 SMART ring_2 387 428 IPR001841 -
Vivi5g06061 448 SUPERFAMILY RING/U-box 381 432 - -
Vivi5g06061 448 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 56 432 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06061 Vivi-Chr5 165655307 165670983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06061 77 432 C3H Transcription Factor Family AT2G46495 32.425 3.23e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06061 - - mtr:25502189 607.831