Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06060 ATGCCAGCCACTGCTATGGCTGTACATACAAAATATCGTCTCATTACTTACTCGTCGGAGATTGTAGATGGGCAGCCGATTTTTGTTTCGTCGAATTGTAGTCCGGCGAAGGCGTTGAAAAAGGAGCCGGCGGGTCATTCTTTTCATTCTGCTGCACTTAAACTTCTCGGTGTTAAGAAAGAAGAGATAAAGGATGATGGTAATAAGAAAGTTGTTGATGATAAGGATCAGGCGTATTTGCCGTCGGATTCTTATAGTAGTAAGAGTAAGAAGAAGAAATCCGGTGAAGAGCAGGAGCAGGATCATTATGCATTGTTGGGTATGAGTCATCTTAGGTATCTTGCTACGGAGGATCAGATTCGGAAAAGCTACCGTGAGACTGCGTTGAGGTTTCATCCGGATAAACAGGCTGCTCTTCTTCTTAATGAGAAGACTGAAGCTGCGAAGCAGGCGAAGAAGGATGAAATAGAAGCTCATTTTAAGGCGATTCAGAAGGCGTATGAAGTGTTGGTTGATCCTGTGAAGAGGAGAATTTATGATTCGACGGATGAGTTTGATGATGAGATTCCCACTGACTGTGCTCCACAAGACTTTTATAAGGTGTTTGGACCTGCTTTTATGAGGAATGGGAGGTGGTCTGTTACTCAACCGATTCCGTCTTTTGGTGATGACAAGACTTCGATAAAAGAGGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAGAGCTGGAGGGAGTTTCCGCAAGCTGATGAGTTTGATCTTGAGCAAGCTGAAACTCGTGATCATAAGAGGTGGATGGAAAGGCAGAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCGAGGGTCCGTACTCTTGTTGATAATGCTTACAAGAGGGATCCTAGAATATTGAGAAGGAAAGAGGAGGAAAAAGCTGAGAAGAAAAGGAAAAAAGAGGCCAGGTTCATGGCGAAGAGGTTAGAGGAGGAAGAAGCAGCCAGAGTTGCAGAAGAGGAGAAACGACGAAAAGCAGAGGAAGATAAAAAAGCTGCTGAAATTGCTTCTCAACTGAAGAAGGTGAAAGAGAAAGAGAAAAAGCTCTTGAGAAAAGAGCGAACACGTCTTAGAACTCTATCAGGACCTATTTTGTCACAACATATGCTTGATATTTCTGAAGATGATGTAGAAAAAATTTGCATGTCATTTAATATTGACCAAATGAGGGGTTTGTGCGAGAAAATGGAAGGCAAAGAGGTGTCAGAGCAAGCAAAAGCTCTAAAAGACGAACTGAGTTGCAAAAAAGATGAGGTTGATGAGAAAAGTAATCAGCAAAATGGCTCTGTCAAAGCTAATGGCAGCATTAGTATTCTTGCAGTCAACGTAGAGAAAAAAGAGAAACCTTGGAGCAAAGAAGAGATTGAGCTATTGAGGAAAGGAATTCAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAAGTTGTTTCAGAATACATTGGTACCGGAAGATCTGTTGAAGAAATAATGAAAGCCACTAAAACTGTTCTCCTCCAGAAGCCCGAAACATCCAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGCTGTCACAATTGCATCTCCACTCTCAACCAGAGAAGAATTGGAAGGGATGCCAATATCAACGGTTACACCTGAAAATAGTGCTGCCACCTCAACACCAGCACCAACAACAACACCTGCATCGACCTCAACACCAGCACCAACAACAACACCTGCATCGACAAACAATAGCAACTCCGAAGATTCTCAAGGAGTTTCAGAACCAGAGGCTTGGTCTTCAGTGCAGGAGAGAGCACTGGTTCAAGCTTTAAAAACCTTCCCAAAAGAAGCTAACCAGAGATGGGAGCGAGTAGCTGAAGCTGTACCTGGAAAGACGGTGATTCAGTGCAAGAAAAAATTTGCGCTGATGAAAGAAAATTTTAGGAACAAGAAAGCTGCAGTTTGA 1977 0.4234 MPATAMAVHTKYRLITYSSEIVDGQPIFVSSNCSPAKALKKEPAGHSFHSAALKLLGVKKEEIKDDGNKKVVDDKDQAYLPSDSYSSKSKKKKSGEEQEQDHYALLGMSHLRYLATEDQIRKSYRETALRFHPDKQAALLLNEKTEAAKQAKKDEIEAHFKAIQKAYEVLVDPVKRRIYDSTDEFDDEIPTDCAPQDFYKVFGPAFMRNGRWSVTQPIPSFGDDKTSIKEVDNFYNFWYSFKSWREFPQADEFDLEQAETRDHKRWMERQNAKLSEKARKEEYARVRTLVDNAYKRDPRILRRKEEEKAEKKRKKEARFMAKRLEEEEAARVAEEEKRRKAEEDKKAAEIASQLKKVKEKEKKLLRKERTRLRTLSGPILSQHMLDISEDDVEKICMSFNIDQMRGLCEKMEGKEVSEQAKALKDELSCKKDEVDEKSNQQNGSVKANGSISILAVNVEKKEKPWSKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPETSKAFDTFLEKRKPAVTIASPLSTREELEGMPISTVTPENSAATSTPAPTTTPASTSTPAPTTTPASTNNSNSEDSQGVSEPEAWSSVQERALVQALKTFPKEANQRWERVAEAVPGKTVIQCKKKFALMKENFRNKKAAV 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06060 658 ProSiteProfiles Myb-like domain profile. 457 512 IPR001005 -
Vivi5g06060 658 MobiDBLite consensus disorder prediction 551 601 - -
Vivi5g06060 658 Pfam Myb-like DNA-binding domain 463 504 IPR001005 -
Vivi5g06060 658 CDD DnaJ 101 172 IPR001623 -
Vivi5g06060 658 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 6 657 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vivi5g06060 658 MobiDBLite consensus disorder prediction 537 604 - -
Vivi5g06060 658 Pfam DnaJ domain 101 180 IPR001623 -
Vivi5g06060 658 CDD SANT 464 506 IPR001005 -
Vivi5g06060 658 SMART dnaj_3 100 175 IPR001623 -
Vivi5g06060 658 Gene3D DnaJ domain 84 201 IPR036869 -
Vivi5g06060 658 SMART sant 598 650 IPR001005 -
Vivi5g06060 658 SMART sant 461 514 IPR001005 -
Vivi5g06060 658 Coils Coil 307 370 - -
Vivi5g06060 658 Coils Coil 417 440 - -
Vivi5g06060 658 SUPERFAMILY Chaperone J-domain 83 179 IPR036869 -
Vivi5g06060 658 Gene3D - 593 658 - -
Vivi5g06060 658 ProSiteProfiles SANT domain profile. 597 652 IPR017884 -
Vivi5g06060 658 ProSiteProfiles dnaJ domain profile. 101 183 IPR001623 -
Vivi5g06060 658 SUPERFAMILY Homeodomain-like 458 506 IPR009057 -
Vivi5g06060 658 Gene3D - 458 515 - -
Vivi5g06060 658 PRINTS DnaJ domain signature 124 139 IPR001623 -
Vivi5g06060 658 PRINTS DnaJ domain signature 155 175 IPR001623 -
Vivi5g06060 658 PRINTS DnaJ domain signature 106 124 IPR001623 -
Vivi5g06060 658 ProSitePatterns Nt-dnaJ domain signature. 160 179 IPR018253 -
Vivi5g06060 658 MobiDBLite consensus disorder prediction 66 99 - -
Vivi5g06060 658 FunFam Myb family transcription factor 596 656 - -
Vivi5g06060 658 ProSiteProfiles Myb-like domain profile. 602 644 IPR001005 -
Vivi5g06060 658 CDD SANT 601 648 IPR001005 -
Vivi5g06060 658 SUPERFAMILY Homeodomain-like 599 646 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06060 Vivi-Chr5 165651263 165653843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06060 102 301 C2H2 Transcription Factor Family AT1G74250 29.876 8.47e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g06060 DnaJ 2.2e-16 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06060 K09522 - gmx:100814414 872.463