Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06058 ATGCCAGCCACTGCTATGGCTGTACATACAAAATATCGTCTCATTACTTACTCGTCGGAGATTGTAGATGGGCAGCCGATTTTTGTTTCGTCGAATTGTAGTCCGGCGAAGGCGTTGAAAAAGGAGCCGGCGGGTCATTCTTTTCATTCTGCTGCACTTAAACTTCTCGGTGTTAAGAAAGAAGAGATAAAGGATGATGGTAATAAGAAAGTTGTTGATGATAAGGATCAGGCGTATTTGCCGTCGGATTCTTATAGTAGTAAGAGTAAGAAGAAGAAATCCGGTGAAGAGCAGGAGCAGGATCATTATGCATTGTTGGGTATGAGTCATCTTAGGTATCTTGCTACGGAGGATCAGATTCGGAAAAGCTACCGTGAGACTGCGTTGAGGTTTCATCCGGATAAACAGGCTGCTCTTCTTCTTAATGAGAAGACTGAAGCTGCGAAGCAGGCGAAGAAGGATGAAATAGAAGCTCATTTTAAGGCGATTCAGAAGGCGTATGAAGTGTTGGTTGATCCTGTGAAGAGGAGAATTTATGATTCGACGGATGAGTTTGATGATGAGATTCCCACTGACTGTGCTCCACAAGACTTTTATAAGGTGTTTGGACCTGCTTTTATGAGGAATGGGAGGTGGTCTGTTACTCAACCGATTCCGTCTTTTGGTGATGACAAGACTTCGATAAAAGAGGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAGAGCTGGAGGGAGTTTCCGCAAGCTGATGAGTTTGATCTTGAGCAAGCTGAAACTCGTGATCATAAGAGGTGGATGGAAAGGCAGAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCGAGGGTCCGTACTCTTGTTGATAATGCTTACAAGAGGGATCCTAGAATATTGAGAAGGAAAGAGGAGGAAAAAGCTGAGAAGAAAAGGAAAAAAGAGGCCAGGTTCATGGCGAAGAGGTTAGAGGAGGAAGAAGCAGCCAGAGTTGCAGAAGAGGAGAAACGACGAAAAGCAGAGGAAGATAAAAAAGCTGCTGAAATTGCTTCTCAACTGAAGAAGGTGAAAGAGAAAGAGAAAAAGCTCTTGAGAAAAGAGCGAACACGTCTTAGAACTCTATCAGGACCTATTTTGTCACAACATATGCTTGATATTTCTGAAGATGATGTAGAAAAAATTTGCATGTCATTTAATATTGACCAAATGAGGGGTTTGTGCGAGAAAATGGAAGGCAAAGAGGTGTCAGAGCAAGCAAAAGCTCTAAAAGACGAACTGAGTTGCAAAAAAGATGAGGTTGATGAGAAAAGTAATCAGCAAAATGGCTCTGTCAAAGCTAATGGCAGCATTAGTATTCTTGCAGTCAACGTAGAGAAAAAAGAGAAACCTTGGAGCAAAGAAGAGATTGAGCTATTGAGGAAAGGAATTCAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAAGTTGTTTCAGAATACATTGGTACCGGAAGATCTGTTGAAGAAATAATGAAAGCCACTAAAACTGTTCTCCTCCAGAAGCCCGAAACATCCAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGCTGTCACAATTGCATCTCCACTCTCAACCAGAGAAGAATTGGAAGGGATGCCAATATCAACGGTTACACCTGAAAATAGTGCTGCCACCTCAACACCAGCACCAACAACAACACCTGCATCGACAAACAATAGCAACTCCGAAGATTCTCAAGGAGTTTCAGAACCAGAGGCTTGGTCTTCAGTGCAGGAGAGAGCACTGGTTCAAGCTTTAAAAACCTTCCCAAAAGAAGCTAACCAGAGATGGGAGCGAGTAGCTGAAGCTGTACCTGGAAAGACGGTGATTCAGTGCAAGAAAAAATTTGCGCTGATGAAAGAAAATTTTAGGAACAAGAAAGCTGCAGTTTGA 1941 0.4214 MPATAMAVHTKYRLITYSSEIVDGQPIFVSSNCSPAKALKKEPAGHSFHSAALKLLGVKKEEIKDDGNKKVVDDKDQAYLPSDSYSSKSKKKKSGEEQEQDHYALLGMSHLRYLATEDQIRKSYRETALRFHPDKQAALLLNEKTEAAKQAKKDEIEAHFKAIQKAYEVLVDPVKRRIYDSTDEFDDEIPTDCAPQDFYKVFGPAFMRNGRWSVTQPIPSFGDDKTSIKEVDNFYNFWYSFKSWREFPQADEFDLEQAETRDHKRWMERQNAKLSEKARKEEYARVRTLVDNAYKRDPRILRRKEEEKAEKKRKKEARFMAKRLEEEEAARVAEEEKRRKAEEDKKAAEIASQLKKVKEKEKKLLRKERTRLRTLSGPILSQHMLDISEDDVEKICMSFNIDQMRGLCEKMEGKEVSEQAKALKDELSCKKDEVDEKSNQQNGSVKANGSISILAVNVEKKEKPWSKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPETSKAFDTFLEKRKPAVTIASPLSTREELEGMPISTVTPENSAATSTPAPTTTPASTNNSNSEDSQGVSEPEAWSSVQERALVQALKTFPKEANQRWERVAEAVPGKTVIQCKKKFALMKENFRNKKAAV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06058 646 ProSiteProfiles Myb-like domain profile. 590 632 IPR001005 -
Vivi5g06058 646 ProSiteProfiles Myb-like domain profile. 457 512 IPR001005 -
Vivi5g06058 646 SUPERFAMILY Homeodomain-like 587 634 IPR009057 -
Vivi5g06058 646 CDD DnaJ 101 172 IPR001623 -
Vivi5g06058 646 Pfam DnaJ domain 101 180 IPR001623 -
Vivi5g06058 646 CDD SANT 464 506 IPR001005 -
Vivi5g06058 646 Gene3D - 581 646 - -
Vivi5g06058 646 SMART dnaj_3 100 175 IPR001623 -
Vivi5g06058 646 FunFam Myb family transcription factor 584 644 - -
Vivi5g06058 646 Coils Coil 307 370 - -
Vivi5g06058 646 Coils Coil 417 440 - -
Vivi5g06058 646 CDD SANT 589 636 IPR001005 -
Vivi5g06058 646 SUPERFAMILY Chaperone J-domain 83 179 IPR036869 -
Vivi5g06058 646 ProSiteProfiles SANT domain profile. 585 640 IPR017884 -
Vivi5g06058 646 MobiDBLite consensus disorder prediction 551 589 - -
Vivi5g06058 646 Gene3D DnaJ domain 84 201 IPR036869 -
Vivi5g06058 646 ProSiteProfiles dnaJ domain profile. 101 183 IPR001623 -
Vivi5g06058 646 Pfam Myb-like DNA-binding domain 463 504 IPR001005 -
Vivi5g06058 646 SUPERFAMILY Homeodomain-like 458 506 IPR009057 -
Vivi5g06058 646 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 6 645 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vivi5g06058 646 PRINTS DnaJ domain signature 124 139 IPR001623 -
Vivi5g06058 646 PRINTS DnaJ domain signature 155 175 IPR001623 -
Vivi5g06058 646 PRINTS DnaJ domain signature 106 124 IPR001623 -
Vivi5g06058 646 ProSitePatterns Nt-dnaJ domain signature. 160 179 IPR018253 -
Vivi5g06058 646 MobiDBLite consensus disorder prediction 537 592 - -
Vivi5g06058 646 MobiDBLite consensus disorder prediction 66 99 - -
Vivi5g06058 646 SMART sant 586 638 IPR001005 -
Vivi5g06058 646 SMART sant 461 514 IPR001005 -
Vivi5g06058 646 Gene3D - 458 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06058 Vivi-Chr5 165651263 165653856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06058 102 301 C2H2 Transcription Factor Family AT1G74250 29.876 9.29e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g06058 DnaJ 2.2e-16 CL0392