Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06036 ATGGAGAATGAATGTAACTGGGAGCAAAACACACTCATCAATGAACTAATTCAGGGGATGGATGTAGCAAAGAGATTAAAGGAAGAGTTGAGAACACCGTATTCCCTGGACACGAGGGATTCGCAGGTGCAGATGATACTATCTTCTTACGAAAAGGCTCTGCGAATTCTAGGATGTAATGAATCAACTTCTAAGTCGCAGACTGTGACTCCAGTCATAACTTCATTACCTCAGTCCCCGGTGTCTACCAATGGGAGTCCGCTAAGTGAGGAGTTTGATGCGACCTTTCAATATCGCAAAGAAGTTAAAAACAAATCAAAGAAAAGAAAGATTGTGCCCAAATGTATTGATCAGATAAGAGTGAGCTGTGAAAGTGGCCTCGAAGGACCGCACGAAGATGGCTTCAACTGGAGAAAGTATGGTCAGAAAGATATCCTCAGTGCCAAACATCCAAGAAGCTACTATCGGTGCACCTTCCGCAACACACAGAACTGCTGGGCAACAAAGCAAGTGCAGAGATCAGACGAAGATCCGACAATATTTGACATAACTTACAGAGGAAAGCATACCTGTTCTCAGGGAAACAATGCCATTGTGCCATACAAGCCACAAGAGATTAAAAAACAAGAGAAACCATACAGTCAAAATAATGATATTCACCATGCTCGACAATCACAAGAACACTTTACAAACTTCAGCAATGCCTTGACTGTGCAAACGGAGAACCTCGGAAACGAAGAAATGACAGGTCCATTCACCTTCCCTTCCACTTCACTTGGATACACGACGCAAGAAATCCAAAGTTGGGTTCCTTCAACTTTAGAGAACGATTCCTTCTTGAGCAGCCTGTTCCAAACACACTTGTTATCTCCAACAACACCAGAATCAAACTATTTTTCATCTCCAACTTTCAACATGAACGATTTTGATGGGTTCTATAACATGCCTCGTTCAGAATCCGATCTTCCAGATATCATTTCCACCAACACGTCAGTCACAAACTCTCCAATTCCCAATTTTCATTTTCCACTTGATCCGGTGGAAATTGATCCAAATTTCCCTTTCAATACTTCAGGATTTTTCTAA 1086 0.419 MENECNWEQNTLINELIQGMDVAKRLKEELRTPYSLDTRDSQVQMILSSYEKALRILGCNESTSKSQTVTPVITSLPQSPVSTNGSPLSEEFDATFQYRKEVKNKSKKRKIVPKCIDQIRVSCESGLEGPHEDGFNWRKYGQKDILSAKHPRSYYRCTFRNTQNCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNAIVPYKPQEIKKQEKPYSQNNDIHHARQSQEHFTNFSNALTVQTENLGNEEMTGPFTFPSTSLGYTTQEIQSWVPSTLENDSFLSSLFQTHLLSPTTPESNYFSSPTFNMNDFDGFYNMPRSESDLPDIISTNTSVTNSPIPNFHFPLDPVEIDPNFPFNTSGFF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06036 361 Pfam WRKY DNA -binding domain 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g06036 361 SUPERFAMILY WRKY DNA-binding domain 130 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g06036 361 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g06036 361 FunFam WRKY transcription factor 53 117 194 - -
Vivi5g06036 361 Gene3D WRKY domain 115 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g06036 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 284 IPR044810 GO:0003700
Vivi5g06036 361 ProSiteProfiles WRKY domain profile. 126 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06036 Vivi-Chr5 165346838 165348559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06036 6 354 WRKY Transcription Factor Family AT4G11070 40.171 1.31e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g06036 WRKY 4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06036 - - gmx:100815760 493.812