Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06032 ATGGCTGATACAGTTGCCGAAATTCCAATTCCCACAAAGAAATCAAAAGGATCCAGAAAGGCTCTCAAGGAGAAAACTCCATCAGCCAGTGATGCCAATATCATCAAAGCTGCGGAATCAAAGGGGAAAGCTGCATCGAAGAAACAACAGCCGAAGCAACAATCGTTCGAGCAAGACTTGATCGAGATGCAGGAGAAACTGCAGCAGTTGCGTCTCGAGAAGGAGAAGACTGACGAACTCTTGAAAGAGAAAGACGAGATCCTGAAGCAAAAGGATGAAGAACTCGAAAATCGGGGAAAGGAGCAAGAGAAACTTCAGATTGAACTTAAGAAATTGCAGAAGTTGAAGGAATTTAAACCTACCATGAATTTGCCTATGGTGAAAGATAAGGAACAAGAGAAGAAGGACAAGAAGAAGAAGAATGGATGCTCTGAGACAAAAAGGCCAACTCATGCTTACATGTTATGGGTCAAAGACCAATGGCATGAGGTAAAGAAGGCGAATCCGGAGGCAGAGTTTAAGGACATTTCAAACATTCTGGGTGCGAAATGGAAGACAGTTAGTGCAGAAGAGAAGAAGCCTTACGAAGAGAAATACCTTGCAGAAAAAGAAGCTTATTTGCAGGTAATTACAAAGGAAAAACGTGAGAGTGAGGCAATGAAACTCTTGGAAGAAGAGCAGAAGCAGAAAACTGCTATGGAGTTGCTTGAGCAGTATATGCAATTCAAACAAGAGACAGAAAAAGAGAACAAGAACAAGAAGAAGAAAGAGAAGGATCCATTGAAACCAAAGCATCCTTTGTCTGCTTATTTCTTGTTTACAAATGATAGAAGAGCAGCTATTCTTGCAGACAACAAGGGTGTCTTGGAGGTTTCCAAGATCACAGGCGAGGAATGGAAAAACATGACAGAAGAACAAAAGAGGCCTTATGAAGAGATTGCAAAGAAGAACAAGGAGAAATATGCACAAGAAATGGAGGCATACAAACAGAAAAAAGAAGAGGATGCTGCAAACATGATGAAAGACGAGGAAGAGCACATGAAACTTCAGAAACATGAAGCCTTGCAAAAGCTCAAGAAGAAGGAGAAAACTGAAAACATGATAAAGGAAACAAAACTGAATCGTCAGAAGAAGAAACAAAGTAAGGAATTTGATCCAAACAGGCCTAAGAGACCTGCTTCCTCGTATATTCTTTTCAGCAAAGAAGCAAGGAAGAGTATACTAGAGGAACGTCCAGAAATTGGAGAAGGTATGCTTAGAACACTGATTTCATTGAAGTGGAAGGATATGAGTGAAAAAGATAAAGAATTGTGGAGTGGTAAAGCATCTGAGGCAATGGAGGGATACAAGAAGGAAATGGAGGAATACAACAAATCTATTGTTGCAAAGCTGGAGGAGAAACTACAGATTAAATCTTAA 1419 0.4031 MADTVAEIPIPTKKSKGSRKALKEKTPSASDANIIKAAESKGKAASKKQQPKQQSFEQDLIEMQEKLQQLRLEKEKTDELLKEKDEILKQKDEELENRGKEQEKLQIELKKLQKLKEFKPTMNLPMVKDKEQEKKDKKKKNGCSETKRPTHAYMLWVKDQWHEVKKANPEAEFKDISNILGAKWKTVSAEEKKPYEEKYLAEKEAYLQVITKEKRESEAMKLLEEEQKQKTAMELLEQYMQFKQETEKENKNKKKKEKDPLKPKHPLSAYFLFTNDRRAAILADNKGVLEVSKITGEEWKNMTEEQKRPYEEIAKKNKEKYAQEMEAYKQKKEEDAANMMKDEEEHMKLQKHEALQKLKKKEKTENMIKETKLNRQKKKQSKEFDPNRPKRPASSYILFSKEARKSILEERPEIGEGMLRTLISLKWKDMSEKDKELWSGKASEAMEGYKKEMEEYNKSIVAKLEEKLQIKS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06032 472 MobiDBLite consensus disorder prediction 355 396 - -
Vivi5g06032 472 Coils Coil 53 115 - -
Vivi5g06032 472 MobiDBLite consensus disorder prediction 241 264 - -
Vivi5g06032 472 Coils Coil 225 259 - -
Vivi5g06032 472 CDD HMG-box_AtHMGB6-like_rpt1 147 214 - -
Vivi5g06032 472 Coils Coil 446 466 - -
Vivi5g06032 472 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 389 457 IPR009071 -
Vivi5g06032 472 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 464 IPR044601 GO:0003677
Vivi5g06032 472 SMART hmgende2 262 330 IPR009071 -
Vivi5g06032 472 SMART hmgende2 145 215 IPR009071 -
Vivi5g06032 472 SMART hmgende2 388 458 IPR009071 -
Vivi5g06032 472 MobiDBLite consensus disorder prediction 120 148 - -
Vivi5g06032 472 SUPERFAMILY HMG-box 376 458 IPR036910 -
Vivi5g06032 472 SUPERFAMILY HMG-box 133 208 IPR036910 -
Vivi5g06032 472 Coils Coil 311 345 - -
Vivi5g06032 472 Gene3D High mobility group box domain 128 212 IPR036910 -
Vivi5g06032 472 Gene3D High mobility group box domain 246 343 IPR036910 -
Vivi5g06032 472 Gene3D High mobility group box domain 372 467 IPR036910 -
Vivi5g06032 472 Coils Coil 361 381 - -
Vivi5g06032 472 MobiDBLite consensus disorder prediction 120 146 - -
Vivi5g06032 472 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 329 IPR009071 -
Vivi5g06032 472 MobiDBLite consensus disorder prediction 240 264 - -
Vivi5g06032 472 SUPERFAMILY HMG-box 250 333 IPR036910 -
Vivi5g06032 472 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 146 214 IPR009071 -
Vivi5g06032 472 MobiDBLite consensus disorder prediction 1 57 - -
Vivi5g06032 472 Pfam HMG (high mobility group) box 263 329 IPR009071 -
Vivi5g06032 472 Pfam HMG (high mobility group) box 146 208 IPR009071 -
Vivi5g06032 472 Pfam HMG (high mobility group) box 389 457 IPR009071 -
Vivi5g06032 472 MobiDBLite consensus disorder prediction 355 389 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vivi5g06032 HMG_box 2.2e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06032 K09273 - gmx:100783033 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06032 5 165318881 165321172 Vivi5g06032 5 165318881 165321172 ECH