Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06027 ATGTTTACACCTTCCAACATCATCAAACACACTCGTCATTACCTCAAACAAACCAAACTCATCAACAATATCTATAACATGAACAGTCACTATCCCTATCCCAAAACTGTACGCATACGTTACACCGACGAAGACGCCACCGACTCCTCCTCCGACGATAACCAACCGCCGCGCCGCAGAGTCAAGACTTTCATCAACGAGATCGCCACCATCGCCAACCAGGACAGAAACATTCCGAGGAAAAACAACAGAGTCATCAAGTCTACATCTACACGTAAAATCAAAACCAAAACTAGGGCTCCGGTGATTCAACGGCATCCGGTGGTTAACTCCGGGAAGAAATACCGGGGAGTGAGACAGAGACCTTGGGGGAAATGGTCGGCGGAGATAAGAGATCATAGAATGCGCGTGAGACTGTGGTTAGGAACTTACAACACTGCTGAAGAAGCTGCTAAGGAGTATGATAAAGCCGCCATTAAAATCCGTGGTGCAAATGCGATAACAAATTTTATTCATCCGGTTCAGAACGTTTCCGGTGAAGAATGTGTAAGTAACAACGGTGTATCCGCCACTCCATTACTTGGTCAGTGTAGCACTTCCGAAAGTGAACCCGAAACAGTGAAAGACGATGTTGTTGTTCCGGTTCCAATTAGAGGTGAATGTGACAATGAATGTTCAGTTGTAGAAAATGATAATAAGTTGAAATCTGATTTCGAGTCGGTTTTTCCTATTCCTTGTGATGATTTATTTGATGAATTTGAAAGAAATTTTGGTAATGAGATAGAGATGGAAAAAAACATGTTGTTTTATGCTGATGACGATTTTAGTGGCAAATTTGTTGATACTATGAGTGAGAGTTTGGATTTGAATTGGAAGAGAGATTATGGTATTTTTCAGGATATAGGGGATTTGTTTAGTTTGGATTTTGGTAGAAATAAAGCCTAG 945 0.4159 MFTPSNIIKHTRHYLKQTKLINNIYNMNSHYPYPKTVRIRYTDEDATDSSSDDNQPPRRRVKTFINEIATIANQDRNIPRKNNRVIKSTSTRKIKTKTRAPVIQRHPVVNSGKKYRGVRQRPWGKWSAEIRDHRMRVRLWLGTYNTAEEAAKEYDKAAIKIRGANAITNFIHPVQNVSGEECVSNNGVSATPLLGQCSTSESEPETVKDDVVVPVPIRGECDNECSVVENDNKLKSDFESVFPIPCDDLFDEFERNFGNEIEMEKNMLFYADDDFSGKFVDTMSESLDLNWKRDYGIFQDIGDLFSLDFGRNKA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06027 314 CDD AP2 113 170 IPR001471 GO:0003700|GO:0006355
Vivi5g06027 314 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Vivi5g06027 314 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Vivi5g06027 314 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Vivi5g06027 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 190 - -
Vivi5g06027 314 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Vivi5g06027 314 SUPERFAMILY DNA-binding domain 114 171 IPR016177 GO:0003677
Vivi5g06027 314 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Vivi5g06027 314 FunFam Ethylene-responsive transcription factor 2 113 172 - -
Vivi5g06027 314 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06027 Vivi-Chr5 165170924 165171960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06027 35 191 AP2-EREBP Transcription Factor Family AT4G27950 48.193 1.08e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g06027 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06027 - - tpra:123917311 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03942 2 151727479 151729275 Vivi5g06027 5 165170924 165171960 PCT