Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06025 ATGAAGTTTCTTGATGTTACATGTTTTGTTATATTCATATTGTGTATTATGTGGAGAGGAAATTGTGAGCCTGTTGAAGATAAAGAGGTTTTGCTTGATTTTGTGAAAAAGTTTCCACCTTCAAGGACACTGAATTGGAATGAGAGTTTCTCTGTTTGTGATAATTGGACTGGTGTAACTTGCAATGGTGATAAGTCTAGGGTTATAGCGATTCGGTTACCGGGTGTTGGATTTCATGGAAAGATTCCACCTAATACTATTAGCAATCTTTCAGAGCTTCAGATTTTGAGTCTTAGATCCAATTTCATAACTGGATTTTTTCCTAGTGATTTTTCTAATTTGAAAAACTTGTCTTTTCTTTATCTTCAGTTTAACAATTTGTCTGGGTCTTTGCCTGATTTTTCAGCTTGGAAGAATCTTACTGTTGTTAATTTGTCTAGTAATAGATTCAATGGGAGTATTCCTGTTTCGCTTTCCAATTTGACTCAGCTTTCGGGTTTGAACCTTGCGAATAATGATCTTTCTGGTGATATTCCTGATCTGAATTTGTCGAGGTTGCAGACGCTGAATTTGTCTAACAATGATTTACATGGCACTGTGCCGAGATCGTTAAGGAGGTTTCCGGATTCGGCGTTTTTTGGGAATAATGTAACTCTTGGAGATTATCCTGTTGTTCCGCCCGTGCCTTCGCCGGTTTATGTTGCGTCTTCGCCCTCGGAGAAACGCGGGAGGCTAAGTGAAGCGGCGCTGCTTGGAATTATTGTTGTTGGGAGTTTTCTTGGGCTTGTGGCATTTGGTTTTTTGATGTTTGTGTGCTGCTGTGCTAGAAAAAAGGATGAAGATGATTATGATGATGATACGTTTGTTGGAAAGTCGAATAAGGGGAAAATGTCTCCGGAGAAAGCTGTTTCGAGGAACATGGATGCTAATAATAAACTGACTTTCTTCGAGGGATGTAATTATGCATTTGATTTGGAGGATTTATTGAGAGCTTCCGCCGAGGTATTAGGAAAGGGAATGTTTGGTACTGCTTACAAGGCGATTCTTGAGGACGCGACAGCAGTTGTTGTGAAGAGATTGAAGGAGGTTGCCTTTGGAAAGAAGGATTTTGAGCAATACATGGAGATTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTGAAAGCTTATTATTATTCGAAAGACGAGAAACTGATGGTATACGATTACTACAGTCAGGGGAGTGTCACTTCTTTGTTGCATGGGAAAAGAGGAGAAGAGAAGGTGCCTTTAGATTGGGATACTAGGTTGAGAATCGCTTTAGGTGCAGCAAGAGGCATTGCTTACATCCATGTTGAGAATAGCGGTAAACTTGTACACGGAAACATCAAGTCTTCGAATATCTTTCTCAACACTAAGCAATACGGTTGTGTATCTGATCTTGGTCTAGCATCCATATCAACGTCCCTCGCCCTACCAATCTCACGAGCAGCAGGTTATCGAGCACCAGAAGTTACAGACACAAGGAAAGCAGCGCAACCTTCTGATGTTTACAGCTTCGGCGTGGTGTTACTAGAGCTTCTAACAGGGAAATCACCTATCCATTCAACAGGTGGTGAGGAGTTTGTTCACTTGGTGAGATGGGTTCATTCGGTTGTGCGAGAGGAGTGGACGGCTGAAGTATTTGACTTAGAGTTGATGAGATATCCAAATATAGAAGAAGAGATGGTTGAGATGTTGCAGATAGCAATGTCGTGTGTGGTAAGAATGCCTGATCAGAGACCCAAGATGTCAGAAGTTGTGAAGATGATAGAAAATGTGAGACTGACTGATAATACACAGACTCGAGCATCATCTGAGAACCAAGCAGAAGTTAGATTATCATCTCAAAGCGAGACCGATAATGAGAACATTAACTCCACTTCTTCCCCTTTGCCGAAAGGAAGTGAATGA 1935 0.4109 MKFLDVTCFVIFILCIMWRGNCEPVEDKEVLLDFVKKFPPSRTLNWNESFSVCDNWTGVTCNGDKSRVIAIRLPGVGFHGKIPPNTISNLSELQILSLRSNFITGFFPSDFSNLKNLSFLYLQFNNLSGSLPDFSAWKNLTVVNLSSNRFNGSIPVSLSNLTQLSGLNLANNDLSGDIPDLNLSRLQTLNLSNNDLHGTVPRSLRRFPDSAFFGNNVTLGDYPVVPPVPSPVYVASSPSEKRGRLSEAALLGIIVVGSFLGLVAFGFLMFVCCCARKKDEDDYDDDTFVGKSNKGKMSPEKAVSRNMDANNKLTFFEGCNYAFDLEDLLRASAEVLGKGMFGTAYKAILEDATAVVVKRLKEVAFGKKDFEQYMEIVGSLKHENVVELKAYYYSKDEKLMVYDYYSQGSVTSLLHGKRGEEKVPLDWDTRLRIALGAARGIAYIHVENSGKLVHGNIKSSNIFLNTKQYGCVSDLGLASISTSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHSTGGEEFVHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRLTDNTQTRASSENQAEVRLSSQSETDNENINSTSSPLPKGSE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06025 644 PANTHER OS05G0588300 PROTEIN 9 610 - -
Vivi5g06025 644 ProSiteProfiles Protein kinase domain profile. 330 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06025 644 SUPERFAMILY Protein kinase-like (PK-like) 334 599 IPR011009 -
Vivi5g06025 644 MobiDBLite consensus disorder prediction 607 644 - -
Vivi5g06025 644 SUPERFAMILY L domain-like 38 206 - -
Vivi5g06025 644 FunFam pollen receptor-like kinase 1 299 404 - -
Vivi5g06025 644 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 405 612 - -
Vivi5g06025 644 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Vivi5g06025 644 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Vivi5g06025 644 Gene3D Phosphorylase Kinase; domain 1 295 404 - -
Vivi5g06025 644 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Vivi5g06025 644 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vivi5g06025 644 Pfam Protein kinase domain 333 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06025 644 Gene3D Ribonuclease Inhibitor 137 223 IPR032675 -
Vivi5g06025 644 Gene3D Transferase(Phosphotransferase) domain 1 406 628 - -
Vivi5g06025 644 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Vivi5g06025 644 SMART LRR_typ_2 114 136 IPR003591 -
Vivi5g06025 644 SMART LRR_typ_2 183 214 IPR003591 -
Vivi5g06025 644 SMART LRR_typ_2 90 113 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06025 Vivi-Chr5 165149040 165151969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06025 16 625 Receptor kinase-like Gene Family AT4G23740 64.830 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi5g06025 Pkinase 3.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06025 - - gmx:100804799 986.097