Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06013 ATGAACAGTCACTATCCCTATCCCAAAACTGTACGTATACGTTACACCGACGAAGACGCCACCGACTCTTCCTCGGACGATAACCAACCGCCCCGCCGCAGAGTCAAGACATTCATCAACGAGATCACTGTCACTAACCAGAACAGAAACATTCCGAGGAAAAACAACAGAGTCATCAAGTCTACATCTACACGTAAAATCAAAGCCAAAACTAGAGCTCCGGTGATTCAACGGAAGCCGGTGGTTAACTCCGGGAAGAAATACCGGGGAGTGAGACAGAGACCTTGGGGGAAATGGTCGGCGGAGATAAGAGATCATAGAATGCGCGTAAGACTGTGGTTAGGAACTTACAACACTGCTGAAGAAGCTGCTAAGGAGTATGATAAAGCCGCCATTAAAATCCGTGGTGCAAATGCGATAACAAATTTTATTCATCCGGTTCAGAACATTTCCGGTGAAGAATGTGCAAGTAACAACGGTGTATCCGCCACTTCAGTACTTGGTCAGTGTAGCACTTCAGAAAGTGAACCAGAAACAGTGAAAGAGGAAGATATTGTTGTTCCGGTTCCAATGAGTGGTGAATGTGAAAATGAATGTTCAGTTGTAGAAAATGTTAATAAGTTGAAATCTGATTTTGAGTCTGTTTTTCCGATTCCTTGTGATGATTTTTTTGATGAATTTGAAAGAAATGATGTATTTGGTAACGAGACAGAGATGGAAAAAAACATGTTATTTTTTCCTGATGTTGATTTTAGTGGCAAGTTTGTTGATACTATGAGTGAGAGTTTGGATTTGAATTGGAAGAGAGATTATGGTATTTTTCAGGATATAGGAGATTTGTTTAGTTCGGATTTTGGTAGAAATAAAGCCTAG 873 0.4089 MNSHYPYPKTVRIRYTDEDATDSSSDDNQPPRRRVKTFINEITVTNQNRNIPRKNNRVIKSTSTRKIKAKTRAPVIQRKPVVNSGKKYRGVRQRPWGKWSAEIRDHRMRVRLWLGTYNTAEEAAKEYDKAAIKIRGANAITNFIHPVQNISGEECASNNGVSATSVLGQCSTSESEPETVKEEDIVVPVPMSGECENECSVVENVNKLKSDFESVFPIPCDDFFDEFERNDVFGNETEMEKNMLFFPDVDFSGKFVDTMSESLDLNWKRDYGIFQDIGDLFSSDFGRNKA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06013 290 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Vivi5g06013 290 Gene3D AP2/ERF domain 86 145 IPR036955 GO:0003700|GO:0006355
Vivi5g06013 290 FunFam Ethylene-responsive transcription factor 2 86 145 - -
Vivi5g06013 290 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Vivi5g06013 290 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Vivi5g06013 290 SUPERFAMILY DNA-binding domain 87 144 IPR016177 GO:0003677
Vivi5g06013 290 SMART rav1_2 87 150 IPR001471 GO:0003700|GO:0006355
Vivi5g06013 290 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 179 - -
Vivi5g06013 290 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Vivi5g06013 290 CDD AP2 86 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06013 Vivi-Chr5 164721790 164722662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06013 9 167 AP2-EREBP Transcription Factor Family AT4G27950 48.214 3.84e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g06013 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06013 - - tpra:123917311 283.108