Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06009 ATGAAGTTTCTTGATGTTACATGTTTTGTTATATGCTTACTGTGTTTGTGGAGAGGAAATTGTGAGCCTGTTGAAGATAAAGAGGTTTTGCTTGATTTTATGAAAAAGTTTCCACCTTCAAGGACACTGAATTGGAATGAGAGTTTCTCTGTTTGTGATAATTGGACTGGTGTAACTTGCAATGGTGATAAGTCTAGGGTTATAGCGATTCGGTTACCGGGTGTTGGATTTCATGGAAATATTCCACCTGATACTATTAGTAAGCTTGCAGAGCTTCAGATTTTGAGTCTTAGATCCAATTTCATAACTGGGGTTTTTCCTGCTGATTTTTCTAATTTGAAAAATTTGTCTTTTCTTTATCTTCAGTTTAACAATTTGTCTGGGCCTTTGCCTGATTTTTCAGCTTGGAAGAATCTTACTGTTGTTAATTTGTCTAGTAATAGATTCAATGGGAGTATTCCTGTTTCGCTTTCGAATTTGACTCAGCTTACTGGTTTGAACCTTGCGAACAATGATCTTTCTGGTGATATTCCTGATCTGAATTTGTCGAGGTTGCAGACGCTGAATTTGTCTAACAATGATTTACATGGCACTGTGCCGAGATCGTTAAGGAGGTTTCCTGATTCGGCGTTTTTTGGGAATAATGTAACTCTTGGAGATTATACCGTTGTTCCGCCCGTGCCTTCGCCGGTTTATGTTGCGTCTTCGCCATCGGAGAAACGCGGGAGGCTAAGTGAAGCGGCGCTGCTTGGAATTATTGTTGTTGGGAGTTTTCTTGGGCTTGTGGCATTTGGTTTTTTGATGTTTGTGTGCTGCTGTGCTAGAAAAAAGGATGATGATTATGATGATGATGCGTTTGTTGGAAAGTCGAATAAGGGGAAAATGTCTCCGGAGAAAGCAGTTTCGAGGAACATGGATGCTAATAATAAACTGACTTTCTTCGAGGGATGTAATTATGCATTTGATTTGGAGGATTTATTGAGAGCTTCCGCCGAGGTATTAGGAAAGGGAATGTTTGGTACTGCTTACAAGGCGATTCTTGAGGACGCGACAGCGGTTGTTGTGAAGAGATTGAAGGAGGTTGCCTTTGGAAAGAAGGATTTTGAGCAATACATGGAGATTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTGAAAGCTTATTATTATTCGAAAGACGAGAAACTGATGGTATACGATTACTACAGTCAGGGGAGTGTCTCTTCATTGTTGCATGGGAAAAGAGGAGAAGAGAAGGTGCCTTTAGATTGGGATACTCGGTTGAGAATCGCTTTAGGTGCAGCAAGAGGCATTGCTCACATCCATGTTGAGAATAGCGGTAAACTTGTACACGGAAACATCAAGTCTTCGAATATCTTTCTCAATACTAAGCAATACGGTTGTGTATCTGATCTTGGTCTAGCATCCATATCAACGTCCCTCGCATTACCAATCTCACGAGCAGCAGGTTACCGAGCACCAGAAGTTACAGACACGAGGAAAGCAGCGCAACCTTCAGATGTTTACAGCTTCGGCGTGGTGTTACTAGAGCTTCTAACAGGGAAATCACCTATCCATTCAACAGGTGGTGAGGAGTTTGTCCACTTGGTGAGATGGGTTCATTCGGTGGTGCGAGAGGAGTGGACGGCCGAAGTATTTGACTTAGAGTTGATGAGATATCCAAATATAGAAGAAGAGATGGTTGAGATGTTGCAGATAGCTATGTCGTGTGTGGTAAGGATGCCTGATCAGAGACCTAAGATGTCAGAAGTTGTGAAGATGATAGAAAATGTGAGACTGACTGATAATACACAGACTCGAGCATCATCTGAGAACCAAGCAGAAGTTAGATTATCATCTCAAAGCGAGACCGATAACGAGAACATTAACTCCACTTCTTCCCCTTTGCCGAAAGGAAGTGAATGA 1929 0.4168 MKFLDVTCFVICLLCLWRGNCEPVEDKEVLLDFMKKFPPSRTLNWNESFSVCDNWTGVTCNGDKSRVIAIRLPGVGFHGNIPPDTISKLAELQILSLRSNFITGVFPADFSNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSSNRFNGSIPVSLSNLTQLTGLNLANNDLSGDIPDLNLSRLQTLNLSNNDLHGTVPRSLRRFPDSAFFGNNVTLGDYTVVPPVPSPVYVASSPSEKRGRLSEAALLGIIVVGSFLGLVAFGFLMFVCCCARKKDDDYDDDAFVGKSNKGKMSPEKAVSRNMDANNKLTFFEGCNYAFDLEDLLRASAEVLGKGMFGTAYKAILEDATAVVVKRLKEVAFGKKDFEQYMEIVGSLKHENVVELKAYYYSKDEKLMVYDYYSQGSVSSLLHGKRGEEKVPLDWDTRLRIALGAARGIAHIHVENSGKLVHGNIKSSNIFLNTKQYGCVSDLGLASISTSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHSTGGEEFVHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRLTDNTQTRASSENQAEVRLSSQSETDNENINSTSSPLPKGSE 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06009 642 Gene3D Ribonuclease Inhibitor 135 222 IPR032675 -
Vivi5g06009 642 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vivi5g06009 642 Gene3D Phosphorylase Kinase; domain 1 293 402 - -
Vivi5g06009 642 ProSiteProfiles Leucine-rich repeat profile. 162 184 IPR001611 GO:0005515
Vivi5g06009 642 SUPERFAMILY L domain-like 37 205 - -
Vivi5g06009 642 Pfam Leucine rich repeat 80 126 IPR001611 GO:0005515
Vivi5g06009 642 Gene3D Ribonuclease Inhibitor 25 134 IPR032675 -
Vivi5g06009 642 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Vivi5g06009 642 Pfam Leucine Rich Repeat 184 204 IPR001611 GO:0005515
Vivi5g06009 642 FunFam Probable inactive receptor kinase RLK902 23 181 - -
Vivi5g06009 642 Gene3D Transferase(Phosphotransferase) domain 1 404 626 - -
Vivi5g06009 642 ProSiteProfiles Protein kinase domain profile. 328 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06009 642 SUPERFAMILY Protein kinase-like (PK-like) 332 597 IPR011009 -
Vivi5g06009 642 MobiDBLite consensus disorder prediction 605 642 - -
Vivi5g06009 642 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 403 610 - -
Vivi5g06009 642 PANTHER OS05G0588300 PROTEIN 9 608 - -
Vivi5g06009 642 FunFam pollen receptor-like kinase 1 297 402 - -
Vivi5g06009 642 Pfam Protein kinase domain 331 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06009 Vivi-Chr5 164699662 164702668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06009 16 623 Receptor kinase-like Gene Family AT4G23740 64.773 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi5g06009 Pkinase 1.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06009 - - gmx:100804799 979.933