Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06006 ATGAAGATAGTGGACTATGAGCGCCATCAAGCCAGTAGTCAAGTGGGGGAAAAGTATGCATCTTTTGATATAGAGGGAGGAAGTGAAGAAAATAAAAGATCTGAAGAAAGTACTGATAATGAAATTGCTTATGAAAATGAATATCCTCGACCTGGCATGAAATTTATCTCTGAAGATCAAGTTACTGATTATTACATAAATTATGCTCGTTGTATGGGTTTTGGAATTGGTAAAATTAGTTCAAAAAACGGAGAGGATGGGAAAAAATATTTTACCCTAGCATGTAGTCGTGCAAGAAAGTATTTGAGTAATTCAAAGAATATTTTGAAGCCGAATCCTATTTCCAAAACACAGTGTAAGGCTAGGTTAAATGTTTGCATGTCTTTAGATGGAACGGTTATAGTTTCAAGTGTGGTTCTAGAGCATAATCATGAACTAAGTCCAACAAAAGCTCGATATTTTAGATGCAACAAGAAATTGGGGCCTTACATGAAAAGGAGGTTAGAACTTAATGATCAAGCTGGGATTAATGTAAGCAGAAACTTTCGATCTTTGGTGATTGAAGCAAGTGGATATGAGAATCTTTCTTTCGGAGAAAAAGATTGTAGAAACTATATAGATAAAGTAAGGAGACTACGACTTGGAACAGGAGACGCCGAAGCTATTCAAAATTATTTTGTTAGAATGCAAAAACAAAATAGTCAATTTTACTATGTAATGGATGTGGATGATGAAAGTCGTTTGCAAAATGTATTTTGGGCCGATGCGAGATGTAGAACTGCCTATGAATATTTCGGTGAAGTCATAACTTTTGACACCACTTATTTGACAAATAAATATGACATGCCTTTTGCCCCTTTTGTTGGAGTTAATCATCATGGTCAATCAATTTTGTTGGGTTGTGCTCTATTGTCAAACGAGGATACTAAAACTTTTACTTGGCTGTTTAACACATGGTTAGAATGTATGCATGGACGTGCACCAAATGCTATAATTACTGATCAAGATAGAGCAATGAAAAATGCAATTGAGGTTGTCTTTCCGAAAGCTCGTCATCGTTGGTGTTTATGGCATTTAATGAAAAAGATTCCAGAAAAGTTAGGTAGGCACTCTGATTATGAGTCTCTCAAAACACTTTTGCACAACATTGTGTATGACTCTTTGAGTAAGACTGATTTTATAGAGAACTGGGAAAAAATGATTGAATATTATAATATGCAAGATAATGTATGGTTGAAAGGGTTGTTTGATGAACGAGATCATTGGGTTCCAATTTATGTAAAAGACACATTTTGGGCTGGAATGTCGACTACACAACGAAGTGAAAGTATGAACGCATTTTTTGATGGATATGTAAACTCAAAGACAACATTGAAGCAATTTGTCGAACAGTATGATAATGCATTGAGAGATAAAATTGAAAAGGAAAACCTGGCAGACTTTGGTTCATTCAATGCAACAGTTGCTTGTGTAAGTCATTTTGGTTTTGAGTCACAATTCCACCATGCATTTACAAATGCAAAATTTAAAGAATTTCAAGTTGAGGTTGCTTCTATGATGTATTGCAATACTCTCTTTGAAAATTTGGAGGGATTGAATTCAATATTTTCTGTTACCGAAAGTAAGAAAGTATTTGACAAAGTAAAGGACATACTGTTCAAAGTGTCTTTCAATGAGAATCTTTTTGAATTACAATGTACTTGTTGCTTGTTTGAGTTCAAAGGTATTTTATGTAGACACATTCTTTGTGTGCTTAAGCTCACTGGTAAAACAGATTCAGTGCCAACTCACTATATTTTGTCACGGTGGAGGAAAGACGTAAGGAGAAAATATACACTTATTAAATGCGGCTTTGATCTATTAGTTGGAAATCCAGATCTTGAACGTGTTAATAAAGCTTGTGATGCTTTTTATGAAGTTGCTTCTACAAAGATAAAGACTAATGATTTACTGTTGAAAGTGATGAATTGGATTGAGAACTTGAAGGTTGAGTTAACATGTGAAGAAATGCCTCCTGAAGTTAGGGAAGATAGTTTAGTTCAAAGTCATGTAACTAGAATTCTTGACCCTAAGGTGGCTCGAAGTAAAGGGCGTCCTCCTACACAAAGAAAAGCTTCTAAAGTTGATCAAATTGTAAAGAAGAAACTTATCAGAAAGAAAAATCAGAATAGAATTCAGAAGAGTACAAATAATCAAAGTCAAGAAGAGGTTATTTTGTGTTACACCTTTTTATTTTCCATATATGTGGCATATATGATATCTGACTAA 2268 0.3426 MKIVDYERHQASSQVGEKYASFDIEGGSEENKRSEESTDNEIAYENEYPRPGMKFISEDQVTDYYINYARCMGFGIGKISSKNGEDGKKYFTLACSRARKYLSNSKNILKPNPISKTQCKARLNVCMSLDGTVIVSSVVLEHNHELSPTKARYFRCNKKLGPYMKRRLELNDQAGINVSRNFRSLVIEASGYENLSFGEKDCRNYIDKVRRLRLGTGDAEAIQNYFVRMQKQNSQFYYVMDVDDESRLQNVFWADARCRTAYEYFGEVITFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCALLSNEDTKTFTWLFNTWLECMHGRAPNAIITDQDRAMKNAIEVVFPKARHRWCLWHLMKKIPEKLGRHSDYESLKTLLHNIVYDSLSKTDFIENWEKMIEYYNMQDNVWLKGLFDERDHWVPIYVKDTFWAGMSTTQRSESMNAFFDGYVNSKTTLKQFVEQYDNALRDKIEKENLADFGSFNATVACVSHFGFESQFHHAFTNAKFKEFQVEVASMMYCNTLFENLEGLNSIFSVTESKKVFDKVKDILFKVSFNENLFELQCTCCLFEFKGILCRHILCVLKLTGKTDSVPTHYILSRWRKDVRRKYTLIKCGFDLLVGNPDLERVNKACDAFYEVASTKIKTNDLLLKVMNWIENLKVELTCEEMPPEVREDSLVQSHVTRILDPKVARSKGRPPTQRKASKVDQIVKKKLIRKKNQNRIQKSTNNQSQEEVILCYTFLFSIYVAYMISD 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06006 755 Pfam SWIM zinc finger 554 585 IPR007527 GO:0008270
Vivi5g06006 755 SMART 26again6 564 591 IPR006564 GO:0008270
Vivi5g06006 755 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 646 IPR031052 GO:0006355
Vivi5g06006 755 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Vivi5g06006 755 MobiDBLite consensus disorder prediction 1 41 - -
Vivi5g06006 755 Pfam FAR1 DNA-binding domain 63 147 IPR004330 -
Vivi5g06006 755 MobiDBLite consensus disorder prediction 23 40 - -
Vivi5g06006 755 Pfam MULE transposase domain 268 362 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06006 Vivi-Chr5 164661296 164665236 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi5g06006 MULE 8.8e-37 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06006 - - vvo:131617032 1111.67