Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05990 ATGGAACAGAAAACTCTTCTGATATCAGCCGTGAGTGCCAGTGTTGGACTTGGAGTTGGATTAGGATTGGCCAATTCTAGACAAACCGTTTCTAAATGGGGACCTAATTACTCTTACTCATCTTCAAACTCCGTTACTGCTAATCAAATTGAGCAAGAAATGATTCGGCAAATTATTGATGGCAGAGATAGTAACGTTACTTTCGATAAATTTCCTTATTACCTAAGTGAGGAGACGCGAGTTTTGCTTACAAGTGTTGCTTATGTTCATTTGAAGCATGCTGAAGTTTCTAAATATACTCGGAATCTCGCCCCGGCGAGTAGAACCATTCTTCTCTCAGGACCAGCTGAACTTTACCAGCAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTACTTCTCTTGGATTTAACTGAATTTTCATTGAAGATTCAGAGTAAATATGGTTCTGGCAACAAAGAATATTCTTTCAAAAGATCTACTTCAGAGTCAACTTTGGAGAAGCTATTTGGGTCATTTTCAATCTTTTCGCAAAGGGAGGAACCTAAAGGAAAAATGCACAAGCAAAGAAGTGGAGTGGACCTACAATCAATGGGCGATGAGACATCTTGTAATCCTCCGAAGCTCCGTAGGAATGCTTGTTCCACCTCAAATATTAGTGGCCTTACTTCTCAAAGCAATCCTACAAATTCAGCTCCTTTGAAGCGCACAGCCAGCTGGTCTTTCGACGAAAAATTACTTATGCAGTCTCTTTACAAGGTTCTACTTTCTGTGTCAAAAACCTACCCCATTGTGCTATATCTGAGGGACGTTGATAGGTTATTATGTAGATCACAAACCATATACAACATGTTCCAAAAAATGTTGAAGAAACTCTCTGGCCCGATTCTGATTCTCGGTTCGCGAGTTCTAGATTCTAGTAATGACTTTGAAGAGATGGATGAGAAACTTAATTTGCTCTTCCCGTACGATATAGAAATCAAACCTCCAGAAGACGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAAAGGATATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCACGGAAGTGCTTGCAGCCAATGATCTTGATTGCGATGACTTGGATTCCATCTGTGTGGAAGACACAATGCTTCTCAGTAACTATATAGAAGAGATTATCGTGTCAGCGATCTCTCATCATTTGATGAAAAACAAAGATCTTGAGTACAGAAACGGAAAGCTCGTTATTTCTTGCAATAGTTTGTCGCATGCATTGGGTATATTCCGAACGGCAAAATTCAGTGGAAGAGATACATCAAAACTGGAAGATCAAGAACTAAAATCTGAGATTCCGAGTGAGGTAGAAACTGTTCCGGAACCAGCAGTGAAGGCTGAAAAGAAGGATGCAAGTGTTGCTCCTGAAAAGAAGGCTGAAAGTGTTGTTCCTGAAAAGAAGGCTGAAAATGTTGCTCCTGAGAAGAAGGCTGCAGCAGAAATATCAACTTCAGCAGCAAAGGCAGGTGTTGAAAAATCGGTTCCACCGACAAAAACTGCTGAAGTTCCTGCCGATAACGAGTTTGAGAAGCGAATAAGGCCTGAAGTCATACCAGCAAATGAGATTGATGTAACATTCGCCGATATTGGTGCCTTAGAAAAAACAAAAGAATCCCTTCAAGAGTTAGTAATGCTTCCTCTCCGAAGGCCGGACCTTTTCACCGGAGGACTTCTTAAACCATGCAGAGGAATATTGCTATTCGGACCTCCTGGAACTGGGAAAACAATGCTGGCAAAAGCCATTGCAAAGGAAGCTGGAGCAAGTTTCATCAATGTATCCATGTCTACCATTACTTCTAAATGGTTCGGTGAAGATGAGAAAAACGTTCGCGCTTTATTCACACTAGCATCCAAAGTCTCTCCAACTATTATATTTGTCGACGAGGTCGATAGCATGCTCGGGCAACGATCAAGACACGGGGAGCATGAAGCTATGCGGAAAATAAAGAACGAATTTATGTCTCATTGGGACGGGCTCACCACAAAACAAGGAGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCATTTGACTTGGATGAAGCTATTATAAGACGATTCGAAAGGAGAATTATGGTAGGACTGCCATCAGTTGAGAACAGGGAAAAGATATTGAGAACTCTCTTGGCAAAAGAAAAGGTTGACGCGGAAATTAATTTTAAGGAACTCGCAACCATGACAGAAGGATATACAGGAAGTGATCTTAAGAATATTTGCACAACCGCTGCTTATAGGCCTGTTAGAGAGTTGATTCAGCAAGAGAGGTTAAAGAATCTGGAGAAGAAACAGAAAGTGAACAAGGGACAGAACAATAATACCCAAGAAGCAGAAGAGGAAGTTCAACAAGAAAGAGTTATTACCCTTAGGCCATTGAATATGCAGGATTTCAAAGAGGCTAAGAGTCAGGTTGCTGCAAGCTTCTCTGCTGAGGGTGCTGGAATGGGCGAGTTGACTCAGTGGAATGAGTTGTATGGAGAAGGAGGTTCTAGGAAGCAAAAACAGTTGACATACTTCCTATGA 2580 0.4143 MEQKTLLISAVSASVGLGVGLGLANSRQTVSKWGPNYSYSSSNSVTANQIEQEMIRQIIDGRDSNVTFDKFPYYLSEETRVLLTSVAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTEFSLKIQSKYGSGNKEYSFKRSTSESTLEKLFGSFSIFSQREEPKGKMHKQRSGVDLQSMGDETSCNPPKLRRNACSTSNISGLTSQSNPTNSAPLKRTASWSFDEKLLMQSLYKVLLSVSKTYPIVLYLRDVDRLLCRSQTIYNMFQKMLKKLSGPILILGSRVLDSSNDFEEMDEKLNLLFPYDIEIKPPEDESHLVSWKSQLEKDMKMIQVQDNKNHITEVLAANDLDCDDLDSICVEDTMLLSNYIEEIIVSAISHHLMKNKDLEYRNGKLVISCNSLSHALGIFRTAKFSGRDTSKLEDQELKSEIPSEVETVPEPAVKAEKKDASVAPEKKAESVVPEKKAENVAPEKKAAAEISTSAAKAGVEKSVPPTKTAEVPADNEFEKRIRPEVIPANEIDVTFADIGALEKTKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRSRHGEHEAMRKIKNEFMSHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEKVDAEINFKELATMTEGYTGSDLKNICTTAAYRPVRELIQQERLKNLEKKQKVNKGQNNNTQEAEEEVQQERVITLRPLNMQDFKEAKSQVAASFSAEGAGMGELTQWNELYGEGGSRKQKQLTYFL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05990 859 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 858 - -
Vivi5g05990 859 MobiDBLite consensus disorder prediction 440 496 - -
Vivi5g05990 859 Gene3D - 49 355 IPR027417 -
Vivi5g05990 859 SMART AAA_5 580 717 IPR003593 GO:0016887
Vivi5g05990 859 ProSitePatterns AAA-protein family signature. 687 706 IPR003960 GO:0005524|GO:0016887
Vivi5g05990 859 Pfam AAA+ lid domain 738 780 IPR041569 -
Vivi5g05990 859 Gene3D - 543 830 IPR027417 -
Vivi5g05990 859 MobiDBLite consensus disorder prediction 198 237 - -
Vivi5g05990 859 MobiDBLite consensus disorder prediction 440 454 - -
Vivi5g05990 859 Gene3D - 716 821 - -
Vivi5g05990 859 MobiDBLite consensus disorder prediction 184 237 - -
Vivi5g05990 859 MobiDBLite consensus disorder prediction 781 801 - -
Vivi5g05990 859 Coils Coil 779 799 - -
Vivi5g05990 859 Pfam ATPase family associated with various cellular activities (AAA) 584 714 IPR003959 GO:0005524|GO:0016887
Vivi5g05990 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 826 IPR027417 -
Vivi5g05990 859 MobiDBLite consensus disorder prediction 461 494 - -
Vivi5g05990 859 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 543 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05990 Vivi-Chr5 164439508 164444823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05990 544 787 Calmodulin-binding Proteins AT3G56690 37.652 7.36e-44 170