Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05979 ATGGACGATACGGTGCTTGACGATATCATACGGAAGCTTGTATCGGCGAAGAACGGGAGAACGACGAAGCAGGTGCATCTTACGGAGGCGGATATTCGGCAGCTTTGTACTTCCGCGAAGGAGATTTTTCTCAGTCAACCTAATCTTCTTGAGCTTGAAGCTCCTATCAAAATTTGTGGAGACGTCCATGGCCAGTTTTCAGACCTCTTAAGACTGTTTGAATATGGGGGATACCCACCTGAAGCCAATTATTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTACTCCTCGCATACAAAATCAAATATAAGGAGAACTTCTTTCTTCTCAGGGGTAACCACGAATGTGCCTCCATCAATCGCATATATGGTTTCTATGATGAGTGCAAAAGGAGGTTCAATGTTCGCCTCTGGAAGACATTTACTGATTGCTTCAACTGTTTACCGGTTGCTGCTCTAGTTGATGAGAAGATCCTTTGTATGCATGGTGGTCTCTCTCCCGAACTTAAAAACTTAGATCAGATACGGAATATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGTGACCTTCTGTGGGCTGATCCTGATAAAGATCTTGAGGGATGGGGAGAAAATGATCGAGGCGTGTCATTCACATTTGGGGCTGATAAGGTTGCTGAGTTTCTTGAGCACCATGATCTTGATCTGATTTGCAGAGCTCACCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTAAGCTGGTGACAATATTCTCTGCACCAAATTACTGTGGGGAGTTTGATAACGCCGGTGCTATGATGAGTGTGGATGACACATTGACATGCTCTTTCCAGATACTCAAGTCTTCCGATAAGAAGGGGAAAGGTGGGTTCGGCAACAACCCATCAAGACCTGGAACTCCACCTCATAAGGGTGGGAAGGCTTAA 966 0.4472 MDDTVLDDIIRKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVAEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKSSDKKGKGGFGNNPSRPGTPPHKGGKA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05979 321 Gene3D - 1 305 IPR029052 -
Vivi5g05979 321 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Vivi5g05979 321 FunFam Serine/threonine-protein phosphatase 1 303 - -
Vivi5g05979 321 MobiDBLite consensus disorder prediction 296 321 - -
Vivi5g05979 321 SMART pp2a_7 27 297 IPR006186 GO:0016787
Vivi5g05979 321 CDD MPP_PP1_PPKL 5 294 - -
Vivi5g05979 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Vivi5g05979 321 SUPERFAMILY Metallo-dependent phosphatases 22 297 IPR029052 -
Vivi5g05979 321 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Vivi5g05979 321 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Vivi5g05979 321 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Vivi5g05979 321 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Vivi5g05979 321 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Vivi5g05979 321 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Vivi5g05979 321 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Vivi5g05979 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 11 299 - -
Vivi5g05979 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05979 Vivi-Chr5 164291354 164295730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05979 56 240 Calmodulin-binding Proteins AT5G63870 29.545 8.45e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05979 K06269 - gmx:100790490 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05979 5 164291354 164295730 Vivi5g05979 5 164291354 164295730 ECH