Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05977 ATGGATGAGCTTGCATTCTTGACGGATTGGGATTTGGAAGCTATCAATGAAACTCCAACAACAACCAACACCAACACTTATTTTTCTCAATTGTTTTCTGAATTACAACATGATGAGTTGTTATTTGGAAATTTTCCAGAATTCTCAGAAGCCACTAATGTTCTTATTGATGAATTTCAAGAACTTTGCAAACCTTTCTACCCTCTTTCATCTCAAACTATTGTTACAAACTCTATGATTATCCCTAAACAGCATGAAGAAGTCAAAGAAATTAAAGCATCAGATGAGAAAGCAGCTTCTCAAGATCTCCAAGTTTCTACAGTTTCCAAATGTAAAAAAAGCAAGAAAAACAAGAACAAGAGTATAGTGAAGAAAGTAACAGCAATGGATGGAACTCTTTGTGATGCATGGGCATGGAGAAAATATGGACAAAAACCGATCAAGGGTTCACCATATCCACGAAGCTACTACAGATGCAGCAGTTCCAAGGGATGTTCAGCAAAGAAACAGGTTGAAAAGAATCACTTAGATCCAAGAGTTTACTTGGTTACATACACTGCAGAACACAATCATCCTCAACCAACTCGAAGAAACTCATTGGCAGGAAGCACTAGGAAGAACAATCTATCAGTTACACATTCTCCAACAGCAGCACCAATGGTGAAGATTGAAGATGAGGTAACTGTGATGACAAGTGTGCAGATGATGGAGAAAGATGAGGAAGATCAGCATCTTCTTGAATGGTTGGAGGGTGCTCAATTATGTGATGATGGTTGGATTCCAAAGAAAGAGTTAGATGAATATTTCATTGGACTAGATAACTACCAATAA 831 0.3755 MDELAFLTDWDLEAINETPTTTNTNTYFSQLFSELQHDELLFGNFPEFSEATNVLIDEFQELCKPFYPLSSQTIVTNSMIIPKQHEEVKEIKASDEKAASQDLQVSTVSKCKKSKKNKNKSIVKKVTAMDGTLCDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSAKKQVEKNHLDPRVYLVTYTAEHNHPQPTRRNSLAGSTRKNNLSVTHSPTAAPMVKIEDEVTVMTSVQMMEKDEEDQHLLEWLEGAQLCDDGWIPKKELDEYFIGLDNYQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05977 276 Gene3D WRKY domain 115 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g05977 276 Pfam WRKY DNA -binding domain 135 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g05977 276 ProSiteProfiles WRKY domain profile. 128 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g05977 276 SMART WRKY_cls 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g05977 276 SUPERFAMILY WRKY DNA-binding domain 132 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g05977 276 MobiDBLite consensus disorder prediction 190 212 - -
Vivi5g05977 276 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 60 222 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05977 Vivi-Chr5 164257662 164259180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05977 1 256 WRKY Transcription Factor Family AT4G23550 41.754 1.74e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g05977 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05977 K13426 - gmx:102663255 250.751