Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05960 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGTCTTTGGTCCCCAGAAGAAGATGAAAAGCTCATCACTTACATTACCACTCATGGCTATGGTTGTTGGAGTGAAGTTCCTGATAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTAGACTGAGATGGATAAATTATTTGAGACCTGATATAAGAAGAGGAAGATTTTCACCTGATGAAGAAAAATTGATTATTAGCCTTCACAATGTTGTAGGCAACAGATGGGCTCACATTGCAAGCCATTTACCTGGTAGAACTGACAACGAAATAAAGAACTACTGGAATTCTTGGATCAAAAAGAAAATCAGAAAGCATAACTCACCTTCTAATTCATCAACCACCACCAATCTTACACAAAACCATGTTATTGATTACAATTTCAATATCAATAAACTAGATCAGAATATTGTAACAACACCAAAACCATCACCATTTCAAGAAACTACCTTGTTTTCTCCAACATGTCCTTTGTTCATGTTTGAGCACGGAACATCAACAACAACAATAACAGCAACAACAACAACATCAACGCAAAATAGTAGTATTAATCTACAAACAGATCAATACTTTCAAGATTCTGTACTAGGTTTGAACTCTGAAGCATGGAATCAAGTTCAATCATCACTACCTCCTCCAATATCAACAACTTTTACAATGGACACAATGAACTATCTACCACCTTTGATAGAGAATGTGGAAAACATGGTGGATGAGGAAGTTGGCGATCATAGACAAGTACAAGAGTTGAACAACATTGATCAATGGCATCAACAACAATATCCTAACAACAGCTTTCTCTTTTGGGACAACATTGTTCATCTCGGTGGGGAAGAAGAACAACAACTAGCACCAAATTCATCATCAAATATGGGAACAAACAGTACTACACTTTCTCCTTTTCCTTCTTCATCTTTTTGA 960 0.3698 MGHHSCCNQQKVKRGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFSPDEEKLIISLHNVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHNSPSNSSTTTNLTQNHVIDYNFNINKLDQNIVTTPKPSPFQETTLFSPTCPLFMFEHGTSTTTITATTTTSTQNSSINLQTDQYFQDSVLGLNSEAWNQVQSSLPPPISTTFTMDTMNYLPPLIENVENMVDEEVGDHRQVQELNNIDQWHQQQYPNNSFLFWDNIVHLGGEEEQQLAPNSSSNMGTNSTTLSPFPSSSF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05960 319 CDD SANT 69 112 IPR001005 -
Vivi5g05960 319 FunFam MYB transcription factor 6 66 - -
Vivi5g05960 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi5g05960 319 SMART sant 13 63 IPR001005 -
Vivi5g05960 319 SMART sant 66 114 IPR001005 -
Vivi5g05960 319 Gene3D - 6 66 - -
Vivi5g05960 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi5g05960 319 CDD SANT 17 61 IPR001005 -
Vivi5g05960 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi5g05960 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi5g05960 319 FunFam Transcription factor MYB26 68 139 - -
Vivi5g05960 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi5g05960 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi5g05960 319 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi5g05960 319 Gene3D - 69 139 - -
Vivi5g05960 319 MobiDBLite consensus disorder prediction 294 319 - -
Vivi5g05960 319 PANTHER MYB DOMAIN PROTEIN 55 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05960 Vivi-Chr5 163908730 163910811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05960 1 285 MYB Transcription Factor Family AT1G63910 48.433 1.86e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g05960 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05960 K09422 K02947 gmx:100803556 363.614