Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05955 ATGATCAAGAAAACTCCATTTCAGGTGAAGACCCTTTGTTCTACTTTCAACATGGCAACAAAAGAGTCGAGCTCTTCTGCTTCTGCTTCGGCTTCTGCTGACACTAAAATCAAAAGGGTTCTTACTCATGGTGGTAAATATGCACACTACAATGTGTATGGAAACTTGTTTGAGGTGTCTTCTAAGTACGTGCCTCCCATTCGTCCTATTGGTAGAGGCGCGTATGGTATCGTTTGTGCTGCTGTTAATTCCGATACGCATGAACAAGTTGCTATTAAGAAGATTGGTAATGCTTTTGACAATATAGTTGATGCGAAAAGGACTTTGAGAGAAATCAAGCTCCTTCGTCATATGGATCATCAAAATATCATTGCCATCAAGGATATCATACGACCCCCGAAAAAGGATGCGTTTAACGATGTATACATTGTTTATGATTTGATGGACACTAATCTCCATCATATAATTCATTCTGACCAACCTCTCTGCGAAGAACATTGTCAGTACTTTTTATATCAGCTGTTACGCGGGCTGAAATATGTGCACTCGGTTAATGTTTTGCACCGTGATCTTAAGCCGAGTAATTTACTAGTGAATACAAACTGTGACCTTAAAATTGGCGACTTCGGTTTGGCAAGGACAACATCTGAAACCGATTTCATGACTGAGTATGTTGTCACGAGATGGTACCGCGCCCCGGAATTGCTCCTCAATTGTTCTGAGTACACTTCTGCGATTGATGTTTGGTCTGTTGGTTGCATATTCGGTGAAATTATGACCAGAGAGCCCTTGTTTCCTGGCAAAGACTATGTCCATCAACTAAGGCTTATCACAGAGTTAATAGGTTCGCCAGATGATGCTAGCCTTGGATTTCTCCGAAGTGACAATGCTAGAAGATACTTTAGACAGTTTCAACAATACCGGAAGCAAAAGTTCTCGTCTAGATTCCCAAACATGTTGCCCGAGGCACTTGACCTGTTAGAAAAGATGCTTATCTTTGATCCAAACAAACGCATCACAGTTGATGAGGCACTGTGTCACCCATATCTTTCATCACTTCACAACACGAACGAGGAGCCGGTGTGTCCAAGGCCATTCGCTTTTGATTTTGATCAGCCATCATGCACCGAAGATCATATCAAAGAGCTCATATGGAAGGAATCTGTGAAGTTCAATCCAGATCCACCTTGTCAGTAA 1197 0.4185 MIKKTPFQVKTLCSTFNMATKESSSSASASASADTKIKRVLTHGGKYAHYNVYGNLFEVSSKYVPPIRPIGRGAYGIVCAAVNSDTHEQVAIKKIGNAFDNIVDAKRTLREIKLLRHMDHQNIIAIKDIIRPPKKDAFNDVYIVYDLMDTNLHHIIHSDQPLCEEHCQYFLYQLLRGLKYVHSVNVLHRDLKPSNLLVNTNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYFRQFQQYRKQKFSSRFPNMLPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHNTNEEPVCPRPFAFDFDQPSCTEDHIKELIWKESVKFNPDPPCQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05955 398 SUPERFAMILY Protein kinase-like (PK-like) 67 357 IPR011009 -
Vivi5g05955 398 Gene3D Phosphorylase Kinase; domain 1 47 387 - -
Vivi5g05955 398 ProSitePatterns MAP kinase signature. 99 202 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vivi5g05955 398 CDD STKc_TEY_MAPK 57 393 - -
Vivi5g05955 398 ProSitePatterns Protein kinases ATP-binding region signature. 70 94 IPR017441 GO:0005524
Vivi5g05955 398 ProSiteProfiles Protein kinase domain profile. 64 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05955 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vivi5g05955 398 Gene3D Transferase(Phosphotransferase) domain 1 148 377 - -
Vivi5g05955 398 FunFam Mitogen-activated protein kinase 148 377 - -
Vivi5g05955 398 Pfam Protein kinase domain 68 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05955 398 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 62 358 - -
Vivi5g05955 398 SMART serkin_6 64 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05955 398 FunFam Mitogen-activated protein kinase 49 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05955 Vivi-Chr5 163863735 163866249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05955 23 393 MAP Kinase Gene Family AT4G01370 77.898 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vivi5g05955 Pkinase 4.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05955 - - tpra:123916746 742.265