Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05952 ATGGCTAGACAACTTTGTGAAGATGAAAAAACATCAAGTGGTGGATTTTGTTATAACCCACAAATCCAAGGTTTTGTGTCGGATCCAGAGATGTTCAATCTCACAACAGGCATGGAGATGATAGGGTTTTCAAAACATCTTCATCATCAACAACATCATCAACAACAACAACATAGTACTGACACAAACATGTGGAAAACAAATTTCTCAGGAGGAAAACTAAGTCAACAACATGTTGGCCCTTCACCTTCCTATCATCATCATCCTCAACAACATCATCATCATCATCAAGATTTCACTGTTTCTGAAACAACAAGTAACGATCATCAAAACCTAAACATGCTTCACCATCATCAACAACATCAAGATTCTTCATCTTCCTCACAGTGGCAACAAGTTGATGATTCATCACTAAGATGTGTTTTCCCATGTGAAGGCAACGAAAGACCAAGTCAAGGACTTTCACTCTCTCTTAGCTCAACAAACCCTTCATCCTTAGTCTTACAATCTTTTGAACTAAGAAACACTCATCAAATCCAAGATCAAGGGTATCAAGGTCATTTCCTTCTCAAAAACTCTAAGTTCTTACTACCAGCTCAACAGCTTCTCAACGAGCTTTGTAGCTTAGAATCCACAAAACAAAATGATCTTGTTTCACAAAAACAAAAATCTCAAAAATTCAACAACAAGCAAAATTTCGAAGAAGAAAATACTCACAATGGTAGCACCAGTTCCTCCATCAAACACTCCTTAACCTCCGTCGAGTTCGTCGAACTCCAGAAAAGAAAAACTAAGCTACTTTCCATGCTCGAAGAGGTGGATAGAAGGTACAAGAACTATTGCAACCAAATGAAGAGTGTGGTATCAACATTTGAAGGAGTAGCTGGAAATGGAGCTGCAAAAGTTTATTCAGCATTAGCATTAAAAGCCATGTCAAGACATTTTAGGTGTTTAAAAGATGGAATAATGGAACAAATCGAAAGAACGAGAAAAACAATGGGAGAAAAAGACCCTATTGCACCCGGAACAACCAAGGGCGAAACTCCTAGGCTCAAAATTCTCGACAGAGTTCTAAGACAACAAAGAGCATTCCAACAAATAAACATCATGGAAACACATCCTTGGCGACCTCAGCGCGGTCTCCCCGAACGATCTGTCTCGGTTCTTCGAGCTTGGCTCTTCGAACACTTTCTTCATCCGTATCCAAGTGACGTTGATAAACATATTTTGGCCCGGCAAACCGGTCTCTCAAGAAGCCAGGTATCAAATTGGTTTATTAATGCAAGAGTGAGACTATGGAAGCCAATGGTGGAAGAAATGTATTTAGAAGAAGAGAAAGAGCAACAAAGGAACACGACAACCTCGGAGGGAGGAAACAACCTTAATCATGAAGAGGAAAATCTTAATGTACTTCAAGATCAATCTCCAACACAACATCCTCATGAAGATCAAAAGCCGCGACTACTTAGGATTGATTCTGAATGTGTCTCGTCGATAATCAACAACGATCATAAAAACGAGGCAAACAAGAATTTGCATCATCATCATGATCAATTAGCCGTGGACGCGTTTGGATCGGTTGATATTGATTTTTCTTCATACAATAGACATCATTCTTCTGATCACATGGTTGGTGCTTACCCTAGTGAGAGTTTCCATCACGGTGGTGGAGGCGGAGGTGGTGGAGTTTCGTTGACGTTAGGGTTACAACAACATGGTGGAAATGGAGTGAGTTTGGCTTTTCCATCAACAAACCAAAGTCCAATGTTTTATACAAGGGATCAAATTGAAGAGCCAGTTCAATACTCTCTTTTGGATGGTGAAGGAACAAATATTATGCCTTATAGGAATCTCATGGGGACACAATTGCTACATGACTTAGCATGA 1887 0.398 MARQLCEDEKTSSGGFCYNPQIQGFVSDPEMFNLTTGMEMIGFSKHLHHQQHHQQQQHSTDTNMWKTNFSGGKLSQQHVGPSPSYHHHPQQHHHHHQDFTVSETTSNDHQNLNMLHHHQQHQDSSSSSQWQQVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSLVLQSFELRNTHQIQDQGYQGHFLLKNSKFLLPAQQLLNELCSLESTKQNDLVSQKQKSQKFNNKQNFEEENTHNGSTSSSIKHSLTSVEFVELQKRKTKLLSMLEEVDRRYKNYCNQMKSVVSTFEGVAGNGAAKVYSALALKAMSRHFRCLKDGIMEQIERTRKTMGEKDPIAPGTTKGETPRLKILDRVLRQQRAFQQINIMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQRNTTTSEGGNNLNHEEENLNVLQDQSPTQHPHEDQKPRLLRIDSECVSSIINNDHKNEANKNLHHHHDQLAVDAFGSVDIDFSSYNRHHSSDHMVGAYPSESFHHGGGGGGGGVSLTLGLQQHGGNGVSLAFPSTNQSPMFYTRDQIEEPVQYSLLDGEGTNIMPYRNLMGTQLLHDLA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05952 628 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
Vivi5g05952 628 SMART HOX_1 375 439 IPR001356 GO:0003677
Vivi5g05952 628 MobiDBLite consensus disorder prediction 219 246 - -
Vivi5g05952 628 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 457 - -
Vivi5g05952 628 FunFam BEL1-like homeodomain protein 4 378 440 - -
Vivi5g05952 628 MobiDBLite consensus disorder prediction 56 84 - -
Vivi5g05952 628 CDD homeodomain 375 436 IPR001356 GO:0003677
Vivi5g05952 628 Pfam Associated with HOX 190 322 IPR006563 -
Vivi5g05952 628 SUPERFAMILY Homeodomain-like 376 441 IPR009057 -
Vivi5g05952 628 Gene3D - 378 456 - -
Vivi5g05952 628 MobiDBLite consensus disorder prediction 46 106 - -
Vivi5g05952 628 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
Vivi5g05952 628 SMART prehox3 184 324 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05952 Vivi-Chr5 163810595 163813839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05952 122 628 Homeobox Transcription Factor Family AT5G41410 45.565 2.19e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi5g05952 POX 8.8e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05952 - - tpra:123913365 912.138