Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05949 ATGGGTTTCCCCGTCGGTTACACCGAACTCCTCTTCCCAAAACTCGTCCTCCACCTCCTCTCCATCTTCACCTTCATCCGAAAACTCATCTCCCTCATCTTCTCCCATCTGGGTCTCCCCGATTTCATCGAACCCGACATTCCATGGCCCGAGAACTCAACCCGACCACCCGAATTCGAATCCGTCTCCGCTCTCCTCATCCGCGAAATCCTCCCCGTTGTCAAGTTCAACGAGCTCGTCGACCTGGACCCACCCGAAAGCTGCGCCGTCTGTCTCACGGAGTTCGAGGAAAACGATGAGATCAGACGGTTGGCGAACTGCAGACACATTTTCCACCGAGGTTGTTTGGACCGTTGGATGGGGTATGATCAGAGGACGTGTCCGTTGTGTAGGACTTCGTTTATACCTGATGATATGCAGAGTGCTTTCAATGAGAGACTTTGGGCGGCTTCTGGGATTCCTGAATTTCACTCTGATGTTTCTGTTTTGTAG 492 0.5244 MGFPVGYTELLFPKLVLHLLSIFTFIRKLISLIFSHLGLPDFIEPDIPWPENSTRPPEFESVSALLIREILPVVKFNELVDLDPPESCAVCLTEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTSFIPDDMQSAFNERLWAASGIPEFHSDVSVL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05949 163 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Vivi5g05949 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 137 IPR013083 -
Vivi5g05949 163 SUPERFAMILY RING/U-box 87 137 - -
Vivi5g05949 163 Pfam Ring finger domain 87 131 IPR001841 -
Vivi5g05949 163 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 151 - -
Vivi5g05949 163 SMART ringv_2 87 131 IPR011016 GO:0008270
Vivi5g05949 163 SMART ring_2 88 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05949 Vivi-Chr5 163730821 163731655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05949 1 152 C3H Transcription Factor Family AT1G63840 58.750 7.85e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05949 K16281 - rcu:8287413 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03892 2 150891707 150892102 Vivi5g05949 5 163730821 163731655 PCT