Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05945 ATGTCTTCTGATCTCTATTCTTTTGGCACAACTTTCCACTCACATTCAACCTCAGAACTTGATGGAACTCAAGATCTTCCATTTCTCTCTGATTCCTTCCCTTTCTTCAACACTACTTCTTCAAACTCATTTGATGAACCTCTTCTTCCTTCTTCTCTAGATCCTTTTTCGCCTTCCTTTTTCTCTTTCTCAACTTCCACTGATCAAAACCTCACAAGTTATCATCAAACTAATGAAACTTTCTCAGATTTTGATCTCTCCCAAGTTAAAAACGAGGAATCATCATCACAAATAAGTGTTGATTATTATAACAATAATCAGTTTCTTCCTCATAGTTACAGTGGTGCTGAGAATGCATCAAAGTACATGCAAAGAAGCTTCAGTAGTAACTCTTTCGAAAAGAAGCCGAGTTTTCAATTCCAAACTCACCGCGATAATCCTATGGATTCGTCGAAATTTCAAATGCATGATTTAAGCTCCACTGATAATAGTTTGAGAAGGGTTTGTAGCACTGGCGATTTGCAGAACATGAAAGAAAATAACATGTCTCCAACGGAGGGAAATTTGCAAGAGGAATCAAATTTCAAAGTAGGCCGATACAACGCCGAAGAAAGAAAGGAAAAAATTTCGAAATACAGAGCTAAGAGAACACAAAGGAACTTTAATAAGACCATTAAGTATGCATGTCGAAAGACATTAGCAGACAATCGACCGCGCGTACGTGGCAGGTTCGCGCGTAATGACGAGCCCAACGAAATTCCTAAAGTTCCGTGTAGAGACGAAGACGAAGTCGATTTTTGGATGGAAGAATTGAGGTTATATGAAGATGATGTAACAGTGGGAGCAGCAGAACAATATCTGAAGAGCAATAGTTATGGAGTTAGTCAATTTCAGTACTTTGGATTATGA 909 0.3828 MSSDLYSFGTTFHSHSTSELDGTQDLPFLSDSFPFFNTTSSNSFDEPLLPSSLDPFSPSFFSFSTSTDQNLTSYHQTNETFSDFDLSQVKNEESSSQISVDYYNNNQFLPHSYSGAENASKYMQRSFSSNSFEKKPSFQFQTHRDNPMDSSKFQMHDLSSTDNSLRRVCSTGDLQNMKENNMSPTEGNLQEESNFKVGRYNAEERKEKISKYRAKRTQRNFNKTIKYACRKTLADNRPRVRGRFARNDEPNEIPKVPCRDEDEVDFWMEELRLYEDDVTVGAAEQYLKSNSYGVSQFQYFGL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05945 302 ProSiteProfiles CCT domain profile. 205 247 IPR010402 GO:0005515
Vivi5g05945 302 Pfam CCT motif 205 247 IPR010402 GO:0005515
Vivi5g05945 302 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g05945 302 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 57 267 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05945 Vivi-Chr5 163693422 163695211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05945 204 252 C2C2-CO-like Transcription Factor Family AT5G24930 51.020 2.25e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi5g05945 CCT 3.8e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05945 - - psat:127101452 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03891 2 150881370 150882414 Vivi5g05945 5 163693422 163695211 PCT