Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05939 ATGGGCGGTTGTTGCTGTTGTGCTTCTAAGGAGACTGTGTTGAGTGCTCCACCTGCTTACTATTATCAGTATCCAAGAGCATCAGATGAGCATGTTCCCCTATCTTCTCATCAAGGTGCTCCCACTGCTTTCTCTGGAAGGCTCTTGGTTGATACTAATCTAGATACTTCGAGTCCTGATACTTATACACCACCTCCTGCTCCTATCCCTTTCAATGTGACACTTGATGCCACTCAGACTGCACCTGTGACTCAAGAAATTTGCGACAAGAACAATACAAATTCTAATTCAGTTCAAGAACCATCTGGAGACAATCACGGAACCTCACCTAAGTCAGAAGAACTGAAAGAATCAGAATGCAAAGGTCAGACTGATTTAGAATTAGACTCGGCAAAGGATTCTGAAATTGAACTTTCAAAGTTGGGTGAGCCTATAGATTTAGTAGAAGAAGACGAAGGATGCCCGATATGTTTAGAAGAATATGACGATGAGAATCCAAAACTCACCACAAAATGTGATCATCACTATCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTCTGTGCTCAGGCCTTGGTTTTCAGCCCTCCCATTGAATAG 618 0.4288 MGGCCCCASKETVLSAPPAYYYQYPRASDEHVPLSSHQGAPTAFSGRLLVDTNLDTSSPDTYTPPPAPIPFNVTLDATQTAPVTQEICDKNNTNSNSVQEPSGDNHGTSPKSEELKESECKGQTDLELDSAKDSEIELSKLGEPIDLVEEDEGCPICLEEYDDENPKLTTKCDHHYHLACILEWMERSETCPVCAQALVFSPPIE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05939 205 MobiDBLite consensus disorder prediction 88 133 - -
Vivi5g05939 205 SUPERFAMILY RING/U-box 148 201 - -
Vivi5g05939 205 MobiDBLite consensus disorder prediction 107 133 - -
Vivi5g05939 205 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 41 201 - -
Vivi5g05939 205 MobiDBLite consensus disorder prediction 88 106 - -
Vivi5g05939 205 SMART ring_2 154 194 IPR001841 -
Vivi5g05939 205 FunFam Putative E3 ubiquitin-protein ligase RHB1A 131 199 - -
Vivi5g05939 205 ProSiteProfiles Zinc finger RING-type profile. 154 194 IPR001841 -
Vivi5g05939 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 199 IPR013083 -
Vivi5g05939 205 Pfam Ring finger domain 154 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05939 Vivi-Chr5 163607591 163610753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05939 1 200 C3H Transcription Factor Family AT5G41350 50.711 2.04e-59 184